Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-381

Saving an Image may generate an exception

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          *Version noticed: 8.3.0

          It was recently noticed that an exception may be generated when using the "Save an Image" feature in IGB. (See comment below for the exception).

          This should be examined further to determine how to reproduce and resolve the issue.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-412 Revert SVG library back to Freehep

              • Major - Major loss of function.
              • Closed

                Activity

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                mason Mason Meyer (Inactive) added a comment -

                This issue was patched by David in the minor release of 8.3.2 so since this story is resolved it will now be closed.

                Show
                mason Mason Meyer (Inactive) added a comment - This issue was patched by David in the minor release of 8.3.2 so since this story is resolved it will now be closed.
                Hide
                Permalink
                mason Mason Meyer (Inactive) added a comment -

                19:04:17.985 INFO com.affymetrix.igb.IGB - Starting: Integrated Genome Browser 8.3.0
                19:04:17.989 INFO com.affymetrix.igb.IGB - Java version: 1.8.0_25 from Oracle Corporation
                19:04:17.993 INFO com.affymetrix.igb.IGB - System memory: 3.8 GB
                19:04:19.472 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/synonyms.txt, but it''s optional.
                19:04:19.501 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/species.txt, but it''s optional.
                19:04:19.503 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/preferences.xml, but it''s optional.
                19:04:20.552 INFO com.affymetrix.igb.survey.Activator - There are currently no surveys available.
                19:04:20.848 INFO c.a.i.b.action.BookmarkActionManager - Loading bookmarks from file /Users/pi/.igb/bookmarks.html
                19:04:20.890 INFO c.a.i.b.action.BookmarkActionManager - Saving bookmarks to file /Users/pi/.igb/bookmarks.html~
                19:04:21.247 INFO com.affymetrix.igb.Activator - IGB Started
                19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.framework
                19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: affymetrix-common
                19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: annotation-tab
                19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: apollo-library
                19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigBedHandler
                19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigWigHandler
                19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: BigWig
                19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bookmark
                19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.codec
                19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.compress
                19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.csv
                19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.io
                19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.lang3
                19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.pool
                19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: console-gui
                19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: externalView
                19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: genometryImpl
                19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.affymetrix.genoviz
                19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: graphTab
                19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.google.guava
                19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: heatmap-editor
                19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb
                19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-genoviz-extensions-api
                19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-service
                19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbScript
                19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbSwingExt
                19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbr
                19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.jidesoft.ultimate
                19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: keyWordSearch
                19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.classic
                19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.core
                19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.lorainelab.logging-config
                19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ncbiBlast
                19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.scr
                19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: paired-data-preprocessor
                19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: pluginsPage
                19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: propertyView
                19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: restrictionSites
                19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModeLucene
                19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModelIdOrProps
                19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchView
                19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sequenceViewer
                19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sharedLibWrapper
                19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: slf4j.api
                19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: survey
                19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: thresholding
                19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: tutorial
                19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: update
                19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: window-service
                19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: windowsServiceDef
                19:04:21.861 [main] INFO com.affymetrix.main.OSGiHandler - OSGi is started with org.apache.felix.framework version 4.2.1.p1
                19:04:23.532 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/A_thaliana_Jun_2009/liftAll.lft, but it''s optional.
                19:04:23.539 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/A_thaliana_Jun_2009/chromosomes.txt, but it''s optional.
                19:04:35.793 INFO c.a.igb.view.load.GeneralLoadUtils - Loaded TAIR10 mRNA in 7.629 secs
                19:04:40.652 INFO com.affymetrix.igb.Application - Searching Lucene for \QAT1G60900\E ...
                19:04:40.653 INFO com.affymetrix.igb.Application - Searching http://igbquickload.org/quickload/A_thaliana_Jun_2009/TAIR10_mRNA.bed.gz for \QAT1G60900\E ...
                19:04:40.797 INFO com.affymetrix.igb.Application - Found 0 matches
                19:04:40.798 INFO com.affymetrix.igb.Application - Searching Properties for \QAT1G60900\E ...
                19:04:40.798 INFO com.affymetrix.igb.Application - Search for \QAT1G60900\E on genome: Searching locally...
                19:04:41.099 INFO com.affymetrix.igb.Application - Found 1 matches for local search
                19:04:41.100 INFO com.affymetrix.igb.Application - Lucene : Found 0 matches, Properties : Found 1 matches for local search,
                19:05:45.818 INFO com.affymetrix.igb.Application - Completed loading sequence for chr1 : 22,423,702 - 22,428,227 from IGB Quickload Quickload Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
                at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
                at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
                at com.affymetrix.igb.shared.ExportDialog.refreshPreview(ExportDialog.java:823)
                at com.affymetrix.igb.shared.ExportDialog.mvlRadioButtonActionPerformed(ExportDialog.java:804)
                at com.affymetrix.igb.shared.ExportDialogGUI.mvlRadioButtonActionPerformed(ExportDialogGUI.java:304)
                at com.affymetrix.igb.shared.ExportDialogGUI$$Lambda$287/1866251567.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
                at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
                at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
                at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:308)
                at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
                at java.awt.Component.processMouseEvent(Component.java:6525)
                at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
                at java.awt.Component.processEvent(Component.java:6290)
                at java.awt.Container.processEvent(Container.java:2234)
                at java.awt.Component.dispatchEventImpl(Component.java:4881)
                at java.awt.Container.dispatchEventImpl(Container.java:2292)
                at java.awt.Component.dispatchEvent(Component.java:4703)
                at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
                at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
                at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
                at java.awt.Container.dispatchEventImpl(Container.java:2278)
                at java.awt.Window.dispatchEventImpl(Window.java:2739)
                at java.awt.Component.dispatchEvent(Component.java:4703)
                at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
                at java.awt.EventQueue.access$400(EventQueue.java:97)
                at java.awt.EventQueue$3.run(EventQueue.java:697)
                at java.awt.EventQueue$3.run(EventQueue.java:691)
                at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
                at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
                at java.awt.EventQueue$4.run(EventQueue.java:719)
                at java.awt.EventQueue$4.run(EventQueue.java:717)
                at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
                at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
                at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
                at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
                at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
                at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

                -------------------------------------------------------
                ERROR: Problem during output.
                java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false
                java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
                at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
                at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
                at com.affymetrix.igb.shared.ExportDialog.initFrame(ExportDialog.java:267)
                at com.affymetrix.igb.shared.ExportDialog.display(ExportDialog.java:161)
                at com.affymetrix.igb.action.SaveImageAction.actionPerformed(SaveImageAction.java:42)
                at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
                at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:310)
                at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
                at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
                at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
                at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
                at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
                at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
                at java.awt.Component.processMouseEvent(Component.java:6525)
                at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
                at java.awt.Component.processEvent(Component.java:6290)
                at java.awt.Container.processEvent(Container.java:2234)
                at java.awt.Component.dispatchEventImpl(Component.java:4881)
                at java.awt.Container.dispatchEventImpl(Container.java:2292)
                at java.awt.Component.dispatchEvent(Component.java:4703)
                at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
                at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
                at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
                at java.awt.Container.dispatchEventImpl(Container.java:2278)
                at java.awt.Window.dispatchEventImpl(Window.java:2739)
                at java.awt.Component.dispatchEvent(Component.java:4703)
                at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
                at java.awt.EventQueue.access$400(EventQueue.java:97)
                at java.awt.EventQueue$3.run(EventQueue.java:697)
                at java.awt.EventQueue$3.run(EventQueue.java:691)
                at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
                at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
                at java.awt.EventQueue$4.run(EventQueue.java:719)
                at java.awt.EventQueue$4.run(EventQueue.java:717)
                at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
                at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
                at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
                at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
                at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
                at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
                -------------------------------------------------------

                -------------------------------------------------------
                ERROR: Problem during output.
                java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false
                java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
                at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
                at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
                at com.affymetrix.igb.shared.ExportDialog.initFrame(ExportDialog.java:267)
                at com.affymetrix.igb.shared.ExportDialog.display(ExportDialog.java:161)
                at com.affymetrix.igb.action.SaveImageAction.actionPerformed(SaveImageAction.java:42)
                at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
                at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:310)
                at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
                at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
                at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
                at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
                at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
                at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
                at java.awt.Component.processMouseEvent(Component.java:6525)
                at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
                at java.awt.Component.processEvent(Component.java:6290)
                at java.awt.Container.processEvent(Container.java:2234)
                at java.awt.Component.dispatchEventImpl(Component.java:4881)
                at java.awt.Container.dispatchEventImpl(Container.java:2292)
                at java.awt.Component.dispatchEvent(Component.java:4703)
                at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
                at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
                at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
                at java.awt.Container.dispatchEventImpl(Container.java:2278)
                at java.awt.Window.dispatchEventImpl(Window.java:2739)
                at java.awt.Component.dispatchEvent(Component.java:4703)
                at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
                at java.awt.EventQueue.access$400(EventQueue.java:97)
                at java.awt.EventQueue$3.run(EventQueue.java:697)
                at java.awt.EventQueue$3.run(EventQueue.java:691)
                at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
                at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
                at java.awt.EventQueue$4.run(EventQueue.java:719)
                at java.awt.EventQueue$4.run(EventQueue.java:717)
                at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
                at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
                at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
                at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
                at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
                at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
                at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
                -------------------------------------------------------

                Show
                mason Mason Meyer (Inactive) added a comment - 19:04:17.985 INFO com.affymetrix.igb.IGB - Starting: Integrated Genome Browser 8.3.0 19:04:17.989 INFO com.affymetrix.igb.IGB - Java version: 1.8.0_25 from Oracle Corporation 19:04:17.993 INFO com.affymetrix.igb.IGB - System memory: 3.8 GB 19:04:19.472 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/synonyms.txt , but it''s optional. 19:04:19.501 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/species.txt , but it''s optional. 19:04:19.503 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/preferences.xml , but it''s optional. 19:04:20.552 INFO com.affymetrix.igb.survey.Activator - There are currently no surveys available. 19:04:20.848 INFO c.a.i.b.action.BookmarkActionManager - Loading bookmarks from file /Users/pi/.igb/bookmarks.html 19:04:20.890 INFO c.a.i.b.action.BookmarkActionManager - Saving bookmarks to file /Users/pi/.igb/bookmarks.html~ 19:04:21.247 INFO com.affymetrix.igb.Activator - IGB Started 19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.framework 19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: affymetrix-common 19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: annotation-tab 19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: apollo-library 19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigBedHandler 19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigWigHandler 19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: BigWig 19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bookmark 19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.codec 19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.compress 19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.csv 19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.io 19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.lang3 19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.pool 19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: console-gui 19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: externalView 19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: genometryImpl 19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.affymetrix.genoviz 19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: graphTab 19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.google.guava 19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: heatmap-editor 19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb 19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-genoviz-extensions-api 19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-service 19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbScript 19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbSwingExt 19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbr 19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.jidesoft.ultimate 19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: keyWordSearch 19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.classic 19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.core 19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.lorainelab.logging-config 19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ncbiBlast 19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.scr 19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: paired-data-preprocessor 19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: pluginsPage 19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: propertyView 19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: restrictionSites 19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModeLucene 19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModelIdOrProps 19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchView 19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sequenceViewer 19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sharedLibWrapper 19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: slf4j.api 19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: survey 19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: thresholding 19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: tutorial 19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: update 19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: window-service 19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: windowsServiceDef 19:04:21.861 [main] INFO com.affymetrix.main.OSGiHandler - OSGi is started with org.apache.felix.framework version 4.2.1.p1 19:04:23.532 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/A_thaliana_Jun_2009/liftAll.lft , but it''s optional. 19:04:23.539 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/A_thaliana_Jun_2009/chromosomes.txt , but it''s optional. 19:04:35.793 INFO c.a.igb.view.load.GeneralLoadUtils - Loaded TAIR10 mRNA in 7.629 secs 19:04:40.652 INFO com.affymetrix.igb.Application - Searching Lucene for \QAT1G60900\E ... 19:04:40.653 INFO com.affymetrix.igb.Application - Searching http://igbquickload.org/quickload/A_thaliana_Jun_2009/TAIR10_mRNA.bed.gz for \QAT1G60900\E ... 19:04:40.797 INFO com.affymetrix.igb.Application - Found 0 matches 19:04:40.798 INFO com.affymetrix.igb.Application - Searching Properties for \QAT1G60900\E ... 19:04:40.798 INFO com.affymetrix.igb.Application - Search for \QAT1G60900\E on genome: Searching locally... 19:04:41.099 INFO com.affymetrix.igb.Application - Found 1 matches for local search 19:04:41.100 INFO com.affymetrix.igb.Application - Lucene : Found 0 matches, Properties : Found 1 matches for local search, 19:05:45.818 INFO com.affymetrix.igb.Application - Completed loading sequence for chr1 : 22,423,702 - 22,428,227 from IGB Quickload Quickload Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125) at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164) at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302) at com.affymetrix.igb.shared.ExportDialog.refreshPreview(ExportDialog.java:823) at com.affymetrix.igb.shared.ExportDialog.mvlRadioButtonActionPerformed(ExportDialog.java:804) at com.affymetrix.igb.shared.ExportDialogGUI.mvlRadioButtonActionPerformed(ExportDialogGUI.java:304) at com.affymetrix.igb.shared.ExportDialogGUI$$Lambda$287/1866251567.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:308) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252) at java.awt.Component.processMouseEvent(Component.java:6525) at javax.swing.JComponent.processMouseEvent(JComponent.java:3321) at java.awt.Component.processEvent(Component.java:6290) at java.awt.Container.processEvent(Container.java:2234) at java.awt.Component.dispatchEventImpl(Component.java:4881) at java.awt.Container.dispatchEventImpl(Container.java:2292) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) at java.awt.Container.dispatchEventImpl(Container.java:2278) at java.awt.Window.dispatchEventImpl(Window.java:2739) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746) at java.awt.EventQueue.access$400(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:697) at java.awt.EventQueue$3.run(EventQueue.java:691) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86) at java.awt.EventQueue$4.run(EventQueue.java:719) at java.awt.EventQueue$4.run(EventQueue.java:717) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) at java.awt.EventQueue.dispatchEvent(EventQueue.java:716) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) ------------------------------------------------------- ERROR: Problem during output. java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125) at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164) at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302) at com.affymetrix.igb.shared.ExportDialog.initFrame(ExportDialog.java:267) at com.affymetrix.igb.shared.ExportDialog.display(ExportDialog.java:161) at com.affymetrix.igb.action.SaveImageAction.actionPerformed(SaveImageAction.java:42) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:310) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289) at java.awt.Component.processMouseEvent(Component.java:6525) at javax.swing.JComponent.processMouseEvent(JComponent.java:3321) at java.awt.Component.processEvent(Component.java:6290) at java.awt.Container.processEvent(Container.java:2234) at java.awt.Component.dispatchEventImpl(Component.java:4881) at java.awt.Container.dispatchEventImpl(Container.java:2292) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) at java.awt.Container.dispatchEventImpl(Container.java:2278) at java.awt.Window.dispatchEventImpl(Window.java:2739) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746) at java.awt.EventQueue.access$400(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:697) at java.awt.EventQueue$3.run(EventQueue.java:691) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86) at java.awt.EventQueue$4.run(EventQueue.java:719) at java.awt.EventQueue$4.run(EventQueue.java:717) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) at java.awt.EventQueue.dispatchEvent(EventQueue.java:716) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) ------------------------------------------------------- ------------------------------------------------------- ERROR: Problem during output. java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125) at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164) at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302) at com.affymetrix.igb.shared.ExportDialog.initFrame(ExportDialog.java:267) at com.affymetrix.igb.shared.ExportDialog.display(ExportDialog.java:161) at com.affymetrix.igb.action.SaveImageAction.actionPerformed(SaveImageAction.java:42) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:310) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289) at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289) at java.awt.Component.processMouseEvent(Component.java:6525) at javax.swing.JComponent.processMouseEvent(JComponent.java:3321) at java.awt.Component.processEvent(Component.java:6290) at java.awt.Container.processEvent(Container.java:2234) at java.awt.Component.dispatchEventImpl(Component.java:4881) at java.awt.Container.dispatchEventImpl(Container.java:2292) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) at java.awt.Container.dispatchEventImpl(Container.java:2278) at java.awt.Window.dispatchEventImpl(Window.java:2739) at java.awt.Component.dispatchEvent(Component.java:4703) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746) at java.awt.EventQueue.access$400(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:697) at java.awt.EventQueue$3.run(EventQueue.java:691) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86) at java.awt.EventQueue$4.run(EventQueue.java:719) at java.awt.EventQueue$4.run(EventQueue.java:717) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) at java.awt.EventQueue.dispatchEvent(EventQueue.java:716) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) -------------------------------------------------------

                  People

                  • Assignee:
                    mason Mason Meyer (Inactive)
                    Reporter:
                    mason Mason Meyer (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: