19:04:17.985 INFO com.affymetrix.igb.IGB - Starting: Integrated Genome Browser 8.3.0
19:04:17.989 INFO com.affymetrix.igb.IGB - Java version: 1.8.0_25 from Oracle Corporation
19:04:17.993 INFO com.affymetrix.igb.IGB - System memory: 3.8 GB
19:04:19.472 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/synonyms.txt, but it''s optional.
19:04:19.501 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/species.txt, but it''s optional.
19:04:19.503 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/preferences.xml, but it''s optional.
19:04:20.552 INFO com.affymetrix.igb.survey.Activator - There are currently no surveys available.
19:04:20.848 INFO c.a.i.b.action.BookmarkActionManager - Loading bookmarks from file /Users/pi/.igb/bookmarks.html
19:04:20.890 INFO c.a.i.b.action.BookmarkActionManager - Saving bookmarks to file /Users/pi/.igb/bookmarks.html~
19:04:21.247 INFO com.affymetrix.igb.Activator - IGB Started
19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.framework
19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: affymetrix-common
19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: annotation-tab
19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: apollo-library
19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigBedHandler
19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigWigHandler
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: BigWig
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bookmark
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.codec
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.compress
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.csv
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.io
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.lang3
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.pool
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: console-gui
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: externalView
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: genometryImpl
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.affymetrix.genoviz
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: graphTab
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.google.guava
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: heatmap-editor
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-genoviz-extensions-api
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-service
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbScript
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbSwingExt
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbr
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.jidesoft.ultimate
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: keyWordSearch
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.classic
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.core
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.lorainelab.logging-config
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ncbiBlast
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.scr
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: paired-data-preprocessor
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: pluginsPage
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: propertyView
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: restrictionSites
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModeLucene
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModelIdOrProps
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchView
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sequenceViewer
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sharedLibWrapper
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: slf4j.api
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: survey
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: thresholding
19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: tutorial
19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: update
19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: window-service
19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: windowsServiceDef
19:04:21.861 [main] INFO com.affymetrix.main.OSGiHandler - OSGi is started with org.apache.felix.framework version 4.2.1.p1
19:04:23.532 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/A_thaliana_Jun_2009/liftAll.lft, but it''s optional.
19:04:23.539 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/A_thaliana_Jun_2009/chromosomes.txt, but it''s optional.
19:04:35.793 INFO c.a.igb.view.load.GeneralLoadUtils - Loaded TAIR10 mRNA in 7.629 secs
19:04:40.652 INFO com.affymetrix.igb.Application - Searching Lucene for \QAT1G60900\E ...
19:04:40.653 INFO com.affymetrix.igb.Application - Searching http://igbquickload.org/quickload/A_thaliana_Jun_2009/TAIR10_mRNA.bed.gz for \QAT1G60900\E ...
19:04:40.797 INFO com.affymetrix.igb.Application - Found 0 matches
19:04:40.798 INFO com.affymetrix.igb.Application - Searching Properties for \QAT1G60900\E ...
19:04:40.798 INFO com.affymetrix.igb.Application - Search for \QAT1G60900\E on genome: Searching locally...
19:04:41.099 INFO com.affymetrix.igb.Application - Found 1 matches for local search
19:04:41.100 INFO com.affymetrix.igb.Application - Lucene : Found 0 matches, Properties : Found 1 matches for local search,
19:05:45.818 INFO com.affymetrix.igb.Application - Completed loading sequence for chr1 : 22,423,702 - 22,428,227 from IGB Quickload Quickload Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
at com.affymetrix.igb.shared.ExportDialog.refreshPreview(ExportDialog.java:823)
at com.affymetrix.igb.shared.ExportDialog.mvlRadioButtonActionPerformed(ExportDialog.java:804)
at com.affymetrix.igb.shared.ExportDialogGUI.mvlRadioButtonActionPerformed(ExportDialogGUI.java:304)
at com.affymetrix.igb.shared.ExportDialogGUI$$Lambda$287/1866251567.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:308)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2739)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:719)
at java.awt.EventQueue$4.run(EventQueue.java:717)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
-------------------------------------------------------
ERROR: Problem during output.
java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false
java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
at com.affymetrix.igb.shared.ExportDialog.initFrame(ExportDialog.java:267)
at com.affymetrix.igb.shared.ExportDialog.display(ExportDialog.java:161)
at com.affymetrix.igb.action.SaveImageAction.actionPerformed(SaveImageAction.java:42)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:310)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2739)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:719)
at java.awt.EventQueue$4.run(EventQueue.java:717)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
-------------------------------------------------------
-------------------------------------------------------
ERROR: Problem during output.
java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false
java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
at com.affymetrix.igb.shared.ExportDialog.initFrame(ExportDialog.java:267)
at com.affymetrix.igb.shared.ExportDialog.display(ExportDialog.java:161)
at com.affymetrix.igb.action.SaveImageAction.actionPerformed(SaveImageAction.java:42)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:310)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2739)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:719)
at java.awt.EventQueue$4.run(EventQueue.java:717)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
-------------------------------------------------------
19:04:17.985 INFO com.affymetrix.igb.IGB - Starting: Integrated Genome Browser 8.3.0
19:04:17.989 INFO com.affymetrix.igb.IGB - Java version: 1.8.0_25 from Oracle Corporation
19:04:17.993 INFO com.affymetrix.igb.IGB - System memory: 3.8 GB
19:04:19.472 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/synonyms.txt, but it''s optional.
19:04:19.501 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/species.txt, but it''s optional.
19:04:19.503 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/preferences.xml, but it''s optional.
19:04:20.552 INFO com.affymetrix.igb.survey.Activator - There are currently no surveys available.
19:04:20.848 INFO c.a.i.b.action.BookmarkActionManager - Loading bookmarks from file /Users/pi/.igb/bookmarks.html
19:04:20.890 INFO c.a.i.b.action.BookmarkActionManager - Saving bookmarks to file /Users/pi/.igb/bookmarks.html~
19:04:21.247 INFO com.affymetrix.igb.Activator - IGB Started
19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.framework
19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: affymetrix-common
19:04:21.652 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: annotation-tab
19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: apollo-library
19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigBedHandler
19:04:21.653 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bigWigHandler
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: BigWig
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: bookmark
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.codec
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.compress
19:04:21.654 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.csv
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.io
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.lang3
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.commons.pool
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: console-gui
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: externalView
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: genometryImpl
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.affymetrix.genoviz
19:04:21.655 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: graphTab
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.google.guava
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: heatmap-editor
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-genoviz-extensions-api
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igb-service
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbScript
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbSwingExt
19:04:21.656 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: igbr
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.jidesoft.ultimate
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: keyWordSearch
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.classic
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ch.qos.logback.core
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: com.lorainelab.logging-config
19:04:21.657 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: ncbiBlast
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: org.apache.felix.scr
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: paired-data-preprocessor
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: pluginsPage
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: propertyView
19:04:21.658 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: restrictionSites
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModeLucene
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchModelIdOrProps
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: searchView
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sequenceViewer
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: sharedLibWrapper
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: slf4j.api
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: survey
19:04:21.659 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: thresholding
19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: tutorial
19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: update
19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: window-service
19:04:21.660 [main] INFO com.affymetrix.main.OSGiHandler - Starting Bundle: windowsServiceDef
19:04:21.861 [main] INFO com.affymetrix.main.OSGiHandler - OSGi is started with org.apache.felix.framework version 4.2.1.p1
19:04:23.532 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/A_thaliana_Jun_2009/liftAll.lft, but it''s optional.
19:04:23.539 INFO c.a.g.util.LocalUrlCacher - Couldn''t find file file:/Users/pi/Dropbox/Public/abiotic/A_thaliana_Jun_2009/chromosomes.txt, but it''s optional.
19:04:35.793 INFO c.a.igb.view.load.GeneralLoadUtils - Loaded TAIR10 mRNA in 7.629 secs
19:04:40.652 INFO com.affymetrix.igb.Application - Searching Lucene for \QAT1G60900\E ...
19:04:40.653 INFO com.affymetrix.igb.Application - Searching http://igbquickload.org/quickload/A_thaliana_Jun_2009/TAIR10_mRNA.bed.gz for \QAT1G60900\E ...
19:04:40.797 INFO com.affymetrix.igb.Application - Found 0 matches
19:04:40.798 INFO com.affymetrix.igb.Application - Searching Properties for \QAT1G60900\E ...
19:04:40.798 INFO com.affymetrix.igb.Application - Search for \QAT1G60900\E on genome: Searching locally...
19:04:41.099 INFO com.affymetrix.igb.Application - Found 1 matches for local search
19:04:41.100 INFO com.affymetrix.igb.Application - Lucene : Found 0 matches, Properties : Found 1 matches for local search,
19:05:45.818 INFO com.affymetrix.igb.Application - Completed loading sequence for chr1 : 22,423,702 - 22,428,227 from IGB Quickload Quickload Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
at com.affymetrix.igb.shared.ExportDialog.refreshPreview(ExportDialog.java:823)
at com.affymetrix.igb.shared.ExportDialog.mvlRadioButtonActionPerformed(ExportDialog.java:804)
at com.affymetrix.igb.shared.ExportDialogGUI.mvlRadioButtonActionPerformed(ExportDialogGUI.java:304)
at com.affymetrix.igb.shared.ExportDialogGUI$$Lambda$287/1866251567.actionPerformed(Unknown Source) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:308)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2739)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:719)
at java.awt.EventQueue$4.run(EventQueue.java:717)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
-------------------------------------------------------
ERROR: Problem during output.
java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false
java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
at com.affymetrix.igb.shared.ExportDialog.initFrame(ExportDialog.java:267)
at com.affymetrix.igb.shared.ExportDialog.display(ExportDialog.java:161)
at com.affymetrix.igb.action.SaveImageAction.actionPerformed(SaveImageAction.java:42)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:310)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2739)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:719)
at java.awt.EventQueue$4.run(EventQueue.java:717)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
-------------------------------------------------------
-------------------------------------------------------
ERROR: Problem during output.
java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false
java.lang.IllegalArgumentException: (minimum <= value <= maximum) is false at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:125)
at javax.swing.SpinnerNumberModel.<init>(SpinnerNumberModel.java:164)
at com.affymetrix.igb.shared.ExportDialog.initSpinner(ExportDialog.java:302)
at com.affymetrix.igb.shared.ExportDialog.initFrame(ExportDialog.java:267)
at com.affymetrix.igb.shared.ExportDialog.display(ExportDialog.java:161)
at com.affymetrix.igb.action.SaveImageAction.actionPerformed(SaveImageAction.java:42)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at com.affymetrix.igb.view.IGBToolBar$JRPButtonTLP.fireActionPerformed(IGBToolBar.java:310)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2739)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:746)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:719)
at java.awt.EventQueue$4.run(EventQueue.java:717)
at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:716)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
-------------------------------------------------------