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  1. IGB
  2. IGBF-3823

Add genomes requested at SDB2024 to IGB

        Details

        • Type: Epic
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Epic Name:
          Add genomes requested during SDB

          Description

          Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below). These genomes don't appear to be available on either ensembl or UCSC, only NCBI.

          Task: Make separate tickets to add or update the following genomes in IGB:

            Attachments

              Activity

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              pkulzer Paige Kulzer created issue -
              pkulzer Paige Kulzer made changes -
              Field Original Value New Value
              Epic Link IGBF-1765 [ 17855 ]
              pkulzer Paige Kulzer made changes -
              Description Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below).

              Hymenolepis diminuta
              Mnemiopsis leidyi
              Update the Oryzias latipes genome to the 2017 version
              Capitella teleta
              Hydra vulgaris
              Triops longicaudatus
              Vanessa cardui               		Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below).

              Hymenolepis diminuta
              Mnemiopsis leidyi (mnemiopsis.leidyi.v3) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963919725.1/
              Update the Oryzias latipes genome to the 2017 version
              Capitella teleta
              Hydra vulgaris
              Triops longicaudatus
              Vanessa cardui
              pkulzer Paige Kulzer made changes -
              Description Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below).

              Hymenolepis diminuta
              Mnemiopsis leidyi (mnemiopsis.leidyi.v3) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963919725.1/
              Update the Oryzias latipes genome to the 2017 version
              Capitella teleta
              Hydra vulgaris
              Triops longicaudatus
              Vanessa cardui               		Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below).

              Hymenolepis diminuta
              Mnemiopsis leidyi (mnemiopsis.leidyi.v3) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963919725.1/
              Update the Oryzias latipes genome to the 2017 version (ASM223467v1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_002234675.1/
              Capitella teleta (Capca1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000328365.1/
              Hydra vulgaris (HydraT2T_AEP) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_038396675.1/
              Triops longicaudatus (TLON_2021) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_022885665.1/
              Vanessa cardui
              pkulzer Paige Kulzer made changes -
              Description Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below).

              Hymenolepis diminuta
              Mnemiopsis leidyi (mnemiopsis.leidyi.v3) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963919725.1/
              Update the Oryzias latipes genome to the 2017 version (ASM223467v1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_002234675.1/
              Capitella teleta (Capca1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000328365.1/
              Hydra vulgaris (HydraT2T_AEP) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_038396675.1/
              Triops longicaudatus (TLON_2021) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_022885665.1/
              Vanessa cardui               		Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below). These genomes don't appear to be available on either ensembl or UCSC, only NCBI.

              Task: Add or update the following genomes in IGB:
              * Hymenolepis diminuta
              * Mnemiopsis leidyi (mnemiopsis.leidyi.v3) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963919725.1/
              * Update the Oryzias latipes genome to the 2017 version (ASM223467v1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_002234675.1/
              * Capitella teleta (Capca1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000328365.1/
              * Hydra vulgaris (HydraT2T_AEP) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_038396675.1/
              * Triops longicaudatus (TLON_2021) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_022885665.1/
              * Vanessa cardui
              pkulzer Paige Kulzer made changes -
              Summary Investigate: Adding requested genomes to IGB Add genomes requested at SDB2024 to IGB
              Issue Type Task [ 3 ] Epic [ 10000 ]
              Description Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below). These genomes don't appear to be available on either ensembl or UCSC, only NCBI.

              Task: Add or update the following genomes in IGB:
              * Hymenolepis diminuta
              * Mnemiopsis leidyi (mnemiopsis.leidyi.v3) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963919725.1/
              * Update the Oryzias latipes genome to the 2017 version (ASM223467v1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_002234675.1/
              * Capitella teleta (Capca1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000328365.1/
              * Hydra vulgaris (HydraT2T_AEP) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_038396675.1/
              * Triops longicaudatus (TLON_2021) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_022885665.1/
              * Vanessa cardui               		Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below). These genomes don't appear to be available on either ensembl or UCSC, only NCBI.

              Task: Make separate tickets to add or update the following genomes in IGB:
              * Hymenolepis diminuta
              * Mnemiopsis leidyi (mnemiopsis.leidyi.v3) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963919725.1/
              * Update the Oryzias latipes genome to the 2017 version (ASM223467v1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_002234675.1/
              * Capitella teleta (Capca1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000328365.1/
              * Hydra vulgaris (HydraT2T_AEP) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_038396675.1/
              * Triops longicaudatus (TLON_2021) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_022885665.1/
              * Vanessa cardui
              Story Points 1
              pkulzer Paige Kulzer made changes -
              Epic Link IGBF-1765 [ 17855 ]
              pkulzer Paige Kulzer made changes -
              Epic Name Add genomes requested at SDB2024 to IGB
              pkulzer Paige Kulzer made changes -
              Epic Name Add genomes requested at SDB2024 to IGB Add genomes requested during SDB
              pkulzer Paige Kulzer made changes -
              Epic Child IGBF-3887 [ 23187 ]
              pkulzer Paige Kulzer made changes -
              Epic Child IGBF-3888 [ 23188 ]
              pkulzer Paige Kulzer made changes -
              Epic Child IGBF-3889 [ 23189 ]
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              Epic Child IGBF-3890 [ 23190 ]
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              Epic Child IGBF-3891 [ 23191 ]
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              Epic Child IGBF-3892 [ 23192 ]
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              Epic Child IGBF-3894 [ 23194 ]
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              Epic Child IGBF-4006 [ 23302 ]
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              Epic Child IGBF-4015 [ 23311 ]
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              Epic Child IGBF-4016 [ 23312 ]
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              Epic Child IGBF-4017 [ 23313 ]
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              Epic Child IGBF-4018 [ 23314 ]
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              Epic Child IGBF-4019 [ 23315 ]
              pkulzer Paige Kulzer made changes -
              Epic Child IGBF-4020 [ 23316 ]
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              Epic Child IGBF-4021 [ 23317 ]
              pkulzer Paige Kulzer made changes -
              Epic Child IGBF-4022 [ 23318 ]
              pkulzer Paige Kulzer made changes -
              Epic Child IGBF-4023 [ 23319 ]
              pkulzer Paige Kulzer made changes -
              Epic Child IGBF-4024 [ 23320 ]

                People

                • Assignee:
                  pkulzer Paige Kulzer
                  Reporter:
                  pkulzer Paige Kulzer
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                  Watchers:
                  2 Start watching this issue

                  Dates

                  • Created:
                    Updated: