Details
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Type:
Epic
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Epic Name:Add genomes requested during SDB
Description
Situation: We talked to several individuals at SDB2024 that do research with species we don't currently support in IGB (see below). These genomes don't appear to be available on either ensembl or UCSC, only NCBI.
Task: Make separate tickets to add or update the following genomes in IGB:
- Hymenolepis diminuta
- Mnemiopsis leidyi (mnemiopsis.leidyi.v3) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_963919725.1/
- Update the Oryzias latipes genome to the 2017 version (ASM223467v1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_002234675.1/
- Capitella teleta (Capca1) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000328365.1/
- Hydra vulgaris (HydraT2T_AEP) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_038396675.1/
- Triops longicaudatus (TLON_2021) - https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_022885665.1/
- Vanessa cardui