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  1. IGB
  2. IGBF-3826

Investigate BREW3R tool for extending gene annotations using RNA-Seq data

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Minor
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          BREW3R (https://github.com/lldelisle/BREW3R.r) is a tool designed to extend gene annotations using publicly available data, addressing cases where gene annotations appear truncated relative to coverage graphs in IGB. This integration aims to enhance the accuracy of gene models in IGB by updating reference annotations with longer UTRs or additional exons where appropriate.

          Conduct initial evaluation to assess the feasibility and benefits of integrating BREW3R into IGB. Also, please identify similar tools with the same functionality that we might be able to implement instead, especially those on platforms other than R.

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                • Assignee:
                  pkulzer Paige Kulzer
                  Reporter:
                  dmarrott Dylan Marrotte (Inactive)
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