Details
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Type:
Task
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Status: Needs 1st Level Review (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Summer 6, Summer 7, Fall 1, Fall 2, Fall 3, Fall 4
Description
Situation: At GCC2024, I chatted with an admin for Galaxy Australia and he thinks we would really benefit in terms of user engagement if we create a short training material for the GTN. Basically, since IGB isn't a tool in Galaxy, there's no way to search for it, and only certain file types can be used with IGB, Galaxy users are likely not finding IGB very easily. So, by creating training materials, at least when people search for IGB in Galaxy that material will come up with information about what kind of file types they can visualize in IGB and how to go about doing so.
Task: Create a brief training material for the GTN that follows the format of this training material created by IGV: https://training.galaxyproject.org/training-material/faqs/galaxy/visualisations_igv.html
This will involve pulling down the training materials repo from the GTN site, making a file for our training material, then committing and pushing those changes via GitHub.
Attachments
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Activity
I could not find the new IGB FAQ.
I looked at the page above and also the page that appeared when I clicked the link labeled "Visualization" but I did not notice an IGB-related FAQ anywhere.
???
Apologies, my instructions were not very clear!
My GTN contact, Saskia, is working on adding a "genome browsers" subtopic to the visualisations topic where we can then put the IGB-related FAQ, but in the meantime we'll need to stick to searching for the IGB-related FAQ using their search bar or by navigating directly to the FAQ by clicking Help > FAQs > Galaxy FAQs > Visualisation.
Here's a link: https://training.galaxyproject.org/training-material/faqs/galaxy/#tip-open-history-files-in-integrated-genome-browser-igb
I looked on several pages claiming to be "FAQs" and "Visualization" related but did not find it.
The new content appears to be unreachable via any existing hyperlinks on the Galaxy Training Network site.
- I was able to find the Tip: Open History files in Integrated Genome Browser (IGB) page at Help > FAQs > Galaxy FAQs > Visualisation
- When I searched in the "Search Tutorials" bar at the top right of https://training.galaxyproject.org/training-material/ for "IGB" the result was for this page: https://training.galaxyproject.org/training-material/faqs/galaxy/visualisations_igb.html
Ann Loraine, here are two different ways to find the new Galaxy training material:
Option 1:
- Open the following link in a new tab: https://training.galaxyproject.org/training-material/
- Click Help near the top of the page
- In the menu that appears, click FAQs
- Click the tan/yellow box that says Galaxy FAQs
- In the list towards the left of the page, click Visualisation
- Click the blue callout button next to the words Open History files in Integrated Genome Browser (IGB)
You should see the new training material now
Option 2:
- Open the following link in a new tab: https://training.galaxyproject.org/training-material/
- In the search bar at the top right of the page, type IGB
- Hit Enter on your keyboard
- Click the search result titled "Open History files in Integrated Genome Browser (IGB)"
You should see the new training material now
Step 1 - Use the following training material to be able to run the GTN website locally: https://training.galaxyproject.org/training-material/topics/contributing/tutorials/running-jekyll/tutorial.html