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  1. IGB
  2. IGBF-3829

Investigate: Look for data suitable for a thresholding/copy number demo

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Minor
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: I talked to a researcher at GCC2024 who was working with calculating copy numbers. Using IGB's thresholding functionality, we should be able to create a demo that walks through the steps to isolate parts of the chromosome with copy numbers greater than 1, then create a new track with just those loci and export it as a new file for further analyses.

          Task: Find data suitable for the thresholding/copy number demo I've briefly described above. This will likely involve some investigative work as to what kind of data is often used for calculating copy number/when that's scientifically meaningful.

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              pkulzer Paige Kulzer created issue -
              pkulzer Paige Kulzer made changes -
              Field Original Value New Value
              Epic Link IGBF-2809 [ 19325 ]
              pkulzer Paige Kulzer made changes -
              Assignee Paige Kulzer [ pkulzer ]
              pkulzer Paige Kulzer made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              pkulzer Paige Kulzer made changes -
              Sprint Summer 6 [ 200 ] Summer 7 [ 201 ]
              pkulzer Paige Kulzer made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              pkulzer Paige Kulzer made changes -
              Assignee Paige Kulzer [ pkulzer ] Dylan Marrotte [ dmarrott ]
              pkulzer Paige Kulzer made changes -
              Sprint Summer 7 [ 201 ] Summer 6 [ 200 ]
              pkulzer Paige Kulzer made changes -
              Priority Major [ 3 ] Minor [ 4 ]
              pkulzer Paige Kulzer made changes -
              Sprint Summer 6 [ 200 ] Summer 7 [ 201 ]
              ann.loraine Ann Loraine made changes -
              Sprint Summer 7 [ 201 ]
              ann.loraine Ann Loraine made changes -
              Assignee Dylan Marrotte [ dmarrott ]

                People

                • Assignee:
                  Unassigned
                  Reporter:
                  pkulzer Paige Kulzer
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                  Dates

                  • Created:
                    Updated: