Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Summer 7
Description
GOAL:
To run the rnaQuast script to the de novo rnaSpades results.
Once we have these tables, we can compare to trinity run.
An example of the slurm script is here:
/projects/tomato_genome/scripts/rob/rnaquastRun.slurm
Ticket IGBF-3857 will use these results as well.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Brandon has created a set of visual graphs to showcase some of these results. See ticket 3857.
Completed for rna spades, results are found here: /projects/tomato_genome/fnb/dataprocessing/brandon_work/RNAQUAST/rna_spades
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
The results for this are in:
/projects/tomato_genome/fnb/dataprocessing/brandon_work/RNAQUAST/rna_spades
Script = rnaquastRun.slurm
Looks like Brandon has had this run successfully.