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  1. IGB
  2. IGBF-3864

Find more single cell RNA seq datasets in10XGenomics

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated. Find up to 5 datasets.

          10XGenomics Datasets: https://www.10xgenomics.com/datasets?query=&page=1&configure%5BhitsPerPage%5D=50&configure%5BmaxValuesPerFacet%5D=1000

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              relates to

              Task - A task that needs to be done. IGBF-3880 Investigate samtools tags consistency across datasets from Cell Ranger

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3838 Obtain and view sequence read alignments for PBMC dataset from Seurat vignette

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3863 Investigate Seurat marker gene alignments in IGB

              • Major - Major loss of function.
              • Closed

                Activity

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                karthik Karthik Raveendran created issue -
                karthik Karthik Raveendran made changes -
                Field Original Value New Value
                Epic Link IGBF-3765 [ 22984 ]
                karthik Karthik Raveendran made changes -
                Link This issue blocks IGBF-3863 [ IGBF-3863 ]
                karthik Karthik Raveendran made changes -
                Link This issue blocks IGBF-3838 [ IGBF-3838 ]
                karthik Karthik Raveendran made changes -
                Link This issue relates to IGBF-3863 [ IGBF-3863 ]
                karthik Karthik Raveendran made changes -
                Link This issue blocks IGBF-3838 [ IGBF-3838 ]
                karthik Karthik Raveendran made changes -
                Link This issue blocks IGBF-3863 [ IGBF-3863 ]
                karthik Karthik Raveendran made changes -
                Link This issue relates to IGBF-3838 [ IGBF-3838 ]
                ann.loraine Ann Loraine made changes -
                Description IGBF-3838 and IGBF-3863, investigates PMBC bam file that was published in 2016. Find and view single cell datasets that are more recently published. IGBF-3838 and IGBF-3863, investigates PMBC bam file that was published in 2016. Find and view single cell datasets that are more recently published.
                karthik Karthik Raveendran made changes -
                Description IGBF-3838 and IGBF-3863, investigates PMBC bam file that was published in 2016. Find and view single cell datasets that are more recently published. IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find and view single cell datasets that are more recently published.
                karthik Karthik Raveendran made changes -
                Description IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find and view single cell datasets that are more recently published. IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated.
                karthik Karthik Raveendran made changes -
                Description IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated. IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated. Find upto 5 datasets.
                karthik Karthik Raveendran made changes -
                Summary Find more single cell datasets and view in IGB Find more single cell RNA seq datasets in 10XGenomics
                karthik Karthik Raveendran made changes -
                Description IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated. Find upto 5 datasets. IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated. Find up to 5 datasets.
                karthik Karthik Raveendran made changes -
                Description IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated. Find up to 5 datasets. IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated. Find up to 5 datasets.

                10XGenomics Datasets: https://www.10xgenomics.com/datasets?query=&page=1&configure%5BhitsPerPage%5D=50&configure%5BmaxValuesPerFacet%5D=1000
                karthik Karthik Raveendran made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 7 [ 201 ] Summer 7, Fall 1 [ 201, 202 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                karthik Karthik Raveendran made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Summary Find more single cell RNA seq datasets in 10XGenomics Find more single cell RNA seq datasets in10XGenomics
                karthik Karthik Raveendran made changes -
                Link This issue relates to IGBF-3880 [ IGBF-3880 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Assignee Karthik Raveendran [ karthik ]

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    karthik Karthik Raveendran
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                    Dates

                    • Created:
                      Updated:
                      Resolved: