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  1. IGB
  2. IGBF-3864

Find more single cell RNA seq datasets in10XGenomics

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          IGBF-3838 and IGBF-3863, investigates PBMC bam file that was published in 2016. Find single cell RNA seq datasets and provide links that someone can use to open up in IGB. Provide a description for the dataset including genome assembly, data creation date, species, publications associated. Find up to 5 datasets.

          10XGenomics Datasets: https://www.10xgenomics.com/datasets?query=&page=1&configure%5BhitsPerPage%5D=50&configure%5BmaxValuesPerFacet%5D=1000

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              relates to

              Task - A task that needs to be done. IGBF-3880 Investigate samtools tags consistency across datasets from Cell Ranger

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3838 Obtain and view sequence read alignments for PBMC dataset from Seurat vignette

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3863 Investigate Seurat marker gene alignments in IGB

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    karthik Karthik Raveendran
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                    • Created:
                      Updated:
                      Resolved: