Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:3
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Epic Link:
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Sprint:Fall 1, Fall 2
Description
GOAL: Prep a new table that harnesses the results from Ticket 3772, The salmon counts.
The first step is to make a new counts table but we add SolyIDs back in. We associate the Soly Ids with the de novo contigs via a previous BLAT alignment. This task is the
We take the 4 tables and a Soly ID table produced previously (ticket # I don't recall)
Make a python script that will read in all the data, and make a large table where each row is a SolyId gene, each column is an experiment.
Will need good column labels!
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Robert Reid [ robertreid ] | Brandon Bendickson [ bbendick ] |
| Summary | Blend 4 salmon count tables into 1 and add SolyIds back | Adding SolyIds back to the NEXTFLOW de novo results via a Python Script |
| Description |
GOAL: Prep a new table that harnesses the results from Ticket 3772, The salmon counts. We take the 4 tables and a Soly ID table produced previously (ticket # I don't recall) Make a python script that will read in all the data, and make a large table where each row is a SolyId gene, each column is an experiment. Will need good column labels! |
GOAL: Prep a new table that harnesses the results from Ticket 3772, The salmon counts.
The first step is to make a new counts table but we add SolyIDs back in. We associate the Soly Ids with the de novo contigs via a previous BLAT alignment. This task is the We take the 4 tables and a Soly ID table produced previously (ticket # I don't recall) Make a python script that will read in all the data, and make a large table where each row is a SolyId gene, each column is an experiment. Will need good column labels! |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Brandon Bendickson [ bbendick ] | Robert Reid [ robertreid ] |
| Assignee | Robert Reid [ robertreid ] | Brandon Bendickson [ bbendick ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Fall 1 [ 202 ] | Fall 1, Fall 2 [ 202, 203 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |