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  1. IGB
  2. IGBF-3878

Adding SolyIds back to the NEXTFLOW de novo results via a Python Script

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          GOAL: Prep a new table that harnesses the results from Ticket 3772, The salmon counts.
          The first step is to make a new counts table but we add SolyIDs back in. We associate the Soly Ids with the de novo contigs via a previous BLAT alignment. This task is the

          We take the 4 tables and a Soly ID table produced previously (ticket # I don't recall)

          Make a python script that will read in all the data, and make a large table where each row is a SolyId gene, each column is an experiment.

          Will need good column labels!

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                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  robofjoy Robert Reid
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