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  1. IGB
  2. IGBF-3883

Merge OLD NextFlow runs with Current de novo NEXTFLOW runs

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          GOAL: Now that we have a merged NEXTFLOW salmon counts table derived from the de novo rna-SPades assembly, we combine want to compare the original NETFLOW results (reference based) to the newly merged de novo table.

          Step 1 is to make an EVEN bigger table. Each row is a gene.
          To start I suggest the table be for only 1 variety ( all NAG, e.g.,).

          We create this 1 table. And then apply Deseq2 and a PCA to see what results we get. Do they various time points align perfectly when comparing the de novo to the reference based?

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                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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