Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3893

Create Telomere to Telomere human genome Quickload

        Details

        • Type: Task
        • Status: Needs 1st Level Review (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: There is a new version of the human genome referred to as either telomere to telomere or T2T or HS1. UCSC does provide this genome, link, and IGB is pulling in the genome through the UCSC REST API. As part of IGBF-3902, IGB is now including the hs1 genome under the "Homo sapiens" Species dropdown, but a Quickload for this genome still needs to be made.

          Tasks: Create a bed14 annotation file for this new genome, and add it and the 2bit file (link) to IGB Quickload.

            Attachments

              Issue Links

              is blocked by

              New Feature - A new feature of the product, which has yet to be developed. IGBF-2537 Enable Quickload to specify the 2bit file for a genome

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3902 Fix incorrect genome names in Species drop-down

              • Major - Major loss of function.
              • Closed

                Activity

                No work has yet been logged on this issue.

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated: