Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 10.1.0
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Fall 2
Description
When running UCSCRestSymloaderTest, getting the below error in the log, this isn't an error that fails the test case, but need to be fixed to make the log cleaner:
java.lang.NoClassDefFoundError: org/apache/commons/lang3/StringUtils
at org.lorainelab.igb.synonymlookup.services.impl.SynonymLookup.loadSynonyms(SynonymLookup.java:73)
at org.lorainelab.igb.synonymlookup.services.impl.ChromosomeSynonymLookupImpl.<init>(ChromosomeSynonymLookupImpl.java:28)
and when trying to load a chromosome that's not present for a dataset, UCSC is now throwing a Bad request error, so we have to handle this in the code:
Sep 20, 2024 2:49:43 PM com.affymetrix.genometry.quickload.QuickLoadSymLoader logException
SEVERE: Unexpected response status: 400
org.apache.http.client.ClientProtocolException: Unexpected response status: 400
at org.lorainelab.igb.ucsc.rest.api.service.utils.ApiResponseHandler.handleResponse(ApiResponseHandler.java:33)
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
|
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Nowlan Freese [ nfreese ] | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Fix Version/s | 10.1.0 [ 11000 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Nowlan Freese [ nfreese ] | Jaya Sravani Sirigineedi [ jsirigin ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |