Details
-
Type:
Bug
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: 10.1.0
-
Labels:None
-
Story Points:1
-
Epic Link:
-
Sprint:Fall 2
Description
Situation: While testing the current main branch I found an issue where searching for a gene would cause a second track to appear and was not listed in the Data Management Table.
Task: Fix IGB so that the second track does not appear.
Steps to reproduce:
- Start IGB
- Select the Danio rerio species and the D_rerio_Sep_2014 genome version
- Sort the chromosomes by length
- Click Load Data for chromosomes chr7, chr5, chr3, chr6, chr2, chr1, chr9
- In the Advanced Search tab, search for hox
- Double-click on one of the results (hoxb2a)
- It seems like the result needs to be on a different chromosome then is currently in view in IGB
- A second track should appear
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Tested using Sravani's branch on Mac.
Unable to reproduce the issue on the new branch (good).
I also tested useq and it is working (good).
Ready for pull request.
| Assignee | Nowlan Freese [ nfreese ] | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Raised pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1041
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
PR is merged.
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Fix Version/s | 10.1.0 [ 11000 ] |
Tested main branch installer on Mac.
Unable to reproduce the original issue.
Closing ticket.
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
The change made in this ticket
IGBF-3584(commit) is the problem, to make the type unique I have changed it to the URL variable but that URL has chromosome details as well and this in some part of code is being used as the method and method names are supposed to be only unique to the dataset, not chromosomes. Fixed this issue by changing the type variable to the contextRoot variable which is the URL without chromosomes and with track included in it, so it will be unique to each track but will be the same for all the chromosomes. Tested it for this issue and also the scenarios mentioned inIGBF-3584by manually adding the DAS server as well, and everything is working as expected. Here is the updated code: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3921. Please review it and let me know if there are any issues.