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  1. IGB
  2. IGBF-3928

Shotgun assembly submission to the TSA

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Purpose: To submit the de novo assembled RNA-Seq contigs to NCBI's TSA archive.

          Since our raw reads already exist as a SRA, this should be straightforward. I just need to align reads to assemblies and the upload assemblies.

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              Task - A task that needs to be done. IGBF-3944 Python script to remove NCBI's contaminants

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    robofjoy Robert Reid
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                    • Created:
                      Updated:
                      Resolved: