Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 3, Fall 4, Fall 5
Description
GOAL: Is to get table of our various assemblies and alignments across the 4 varieties so that we can showcase the differences.
We need the following.
Summary Numbers of our 4 de novo RNASpades assemblies
Number of reads that go in
Summary of the experiment SRA runs: Original data
Total contigs
Number > 100
Largest one
Number > 1000
Number that align to SL5
Mapping reads back to assemblies
Total that align
Total that align to SL5
Break down by temp, time, tissue type, variety
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Fall 3 [ 204 ] | Fall 3, Fall 4 [ 204, 205 ] |
| Rank | Ranked higher |
| Sprint | Fall 3, Fall 4 [ 204, 205 ] | Fall 3, Fall 4, Fall 5 [ 204, 205, 206 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |