[IGBF-3935] Smoke Test release-10.1.0 on Linux - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
2
Epic Link:
Release IGB 10.1.0
Sprint:
Fall 3, Fall 4

Description

Download the new install from https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/ and test it using https://wiki.bioviz.org/confluence/display/ITD/How+to+test+-+read+this+first

Attachments

Issue Links

relates to

IGBF-3933 Smoke Test release-10.1.0 on Mac

Closed

IGBF-3934 Smoke Test release-10.1.0 on Windows

Closed

Activity

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Nowlan Freese created issue - 09/Oct/24 10:53 AM

Nowlan Freese made changes - 09/Oct/24 10:53 AM

Field	Original Value	New Value
Epic Link		IGBF-3871 [ 23171 ]

Nowlan Freese made changes - 09/Oct/24 10:53 AM

Link

This issue clones ~~IGBF-3934~~ [ ~~IGBF-3934~~ ]

Nowlan Freese made changes - 09/Oct/24 10:54 AM

Link

This issue relates to ~~IGBF-3934~~ [ ~~IGBF-3934~~ ]

Nowlan Freese made changes - 09/Oct/24 10:54 AM

Link

This issue relates to ~~IGBF-3933~~ [ ~~IGBF-3933~~ ]

Nowlan Freese made changes - 09/Oct/24 10:54 AM

Link

This issue clones ~~IGBF-3934~~ [ ~~IGBF-3934~~ ]

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Nowlan Freese added a comment - 09/Oct/24 10:55 AM

Add Data Source endpoint
App Manager
BioViz Connect
Bookmarks
Cache
Color by... and Filter...
Data Provider
eFP-Seq Browser
External View
FileChooser
File Formats
Galaxy
Image Export
Installer
Local Quickload
Navigation
ProtAnnot
Quickload Saver
REST API Data Sources
Search
Soft-Clipping
Synonyms
Tabbed Panels
Toolbar
Track Operators - Annotation Tracks
Track Operators - Graph Tracks
Track View

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Nowlan Freese added a comment - 09/Oct/24 10:55 AM Add Data Source endpoint App Manager BioViz Connect Bookmarks Cache Color by... and Filter... Data Provider eFP-Seq Browser External View FileChooser File Formats Galaxy Image Export Installer Local Quickload Navigation ProtAnnot Quickload Saver REST API Data Sources Search Soft-Clipping Synonyms Tabbed Panels Toolbar Track Operators - Annotation Tracks Track Operators - Graph Tracks Track View

Paige Kulzer made changes - 10/Oct/24 9:55 AM

Assignee

Nowlan Freese [ nfreese ]

Ann Loraine made changes - 21/Oct/24 9:40 AM

Sprint

Fall 3 [ 204 ]

Fall 3, Fall 4 [ 204, 205 ]

Ann Loraine made changes - 21/Oct/24 9:40 AM

Rank

Ranked higher

Jaya Sravani Sirigineedi made changes - 24/Oct/24 9:56 AM

Assignee

Nowlan Freese [ nfreese ]

Jaya Sravani Sirigineedi [ jsirigin ]

Jaya Sravani Sirigineedi made changes - 24/Oct/24 9:56 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

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Jaya Sravani Sirigineedi added a comment - 24/Oct/24 12:21 PM - edited

Subsystems

Add Data Source endpoint: Completed without errors
App Manager: Completed everything's working but all apps have an L next to them in the App Manager, indicating these are all stored locally rather than being accessed from BioViz even when Bioviz is present. Also, I saw one extra repository, Pending apps at start, it's in disabled state.
BioViz Connect: Completed without errors
Bookmarks: Completed without errors entire Bookmark folder is getting exported, which isn't a problem confirmed in Mac ticket.
Cache: Completed without errors suggested an improvement in UI, created a ticket for that IGBF-3954 not a release blocker.
Color by... and Filter...: Completed without errors
Data Provider: Completed without errors
eFP-Seq Browser: Completed without errors but data is already loaded automatically without clicking Load Data, which isn't a problem confirmed in Mac ticket.
External View: Completed without errors
FileChooser: Instructions aren't that clear, but completed testing except for "Save PAXML File… (in ProtAnnot file menu)" option as I wasn't able to find that. Also, for App Repositories and Open File there aren't any file type restrictions in the linux file chooser
File Formats: Partially tested, Can load the SmokeTestQuickload and bam files

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Jaya Sravani Sirigineedi added a comment - 24/Oct/24 12:21 PM - edited Subsystems Add Data Source endpoint: Completed without errors App Manager: Completed everything's working but all apps have an L next to them in the App Manager, indicating these are all stored locally rather than being accessed from BioViz even when Bioviz is present. Also, I saw one extra repository, Pending apps at start, it's in disabled state. BioViz Connect: Completed without errors Bookmarks: Completed without errors entire Bookmark folder is getting exported, which isn't a problem confirmed in Mac ticket. Cache: Completed without errors suggested an improvement in UI, created a ticket for that IGBF-3954 not a release blocker. Color by... and Filter...: Completed without errors Data Provider: Completed without errors eFP-Seq Browser: Completed without errors but data is already loaded automatically without clicking Load Data, which isn't a problem confirmed in Mac ticket. External View: Completed without errors FileChooser: Instructions aren't that clear, but completed testing except for "Save PAXML File… (in ProtAnnot file menu)" option as I wasn't able to find that. Also, for App Repositories and Open File there aren't any file type restrictions in the linux file chooser File Formats: Partially tested, Can load the SmokeTestQuickload and bam files

Nowlan Freese made changes - 25/Oct/24 1:00 PM

Assignee

Jaya Sravani Sirigineedi [ jsirigin ]

Nowlan Freese [ nfreese ]

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Nowlan Freese added a comment - 25/Oct/24 2:43 PM - edited

File Formats: Completed without errors
Galaxy: Completed without errors
Image Export: Completed without errors
Installer: Pre-Release testing completed without errors
Local Quickload: Completed without errors
Navigation: Completed without errors
ProtAnnot: Completed without errors
Quickload Saver: Completed without errors, though I noticed that when saving a quickload the non-native file chooser is used - this could be fixed/improved at some point in the future
REST API Data Sources: Completed without errors
Search: Completed without errors, but we need to add a test to make sure the nucleotide symbols and literal "N" searches also work for residue search (tested on Linux, works fine).
Soft-Clipping: Completed without errors
Synonyms: Completed without errors
Tabbed Panels: Completed without errors
Toolbar: Completed without errors
Track Operators - Annotation Tracks: Completed without errors
Track Operators - Graph Tracks: Completed without errors
Track View: Completed without errors

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Nowlan Freese added a comment - 25/Oct/24 2:43 PM - edited File Formats: Completed without errors Galaxy: Completed without errors Image Export: Completed without errors Installer: Pre-Release testing completed without errors Local Quickload: Completed without errors Navigation: Completed without errors ProtAnnot: Completed without errors Quickload Saver: Completed without errors, though I noticed that when saving a quickload the non-native file chooser is used - this could be fixed/improved at some point in the future REST API Data Sources: Completed without errors Search: Completed without errors, but we need to add a test to make sure the nucleotide symbols and literal "N" searches also work for residue search (tested on Linux, works fine). Soft-Clipping: Completed without errors Synonyms: Completed without errors Tabbed Panels: Completed without errors Toolbar: Completed without errors Track Operators - Annotation Tracks: Completed without errors Track Operators - Graph Tracks: Completed without errors Track View: Completed without errors

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Nowlan Freese added a comment - 29/Oct/24 1:21 PM

Linux testing complete for release-10.1.0. No identified issues are release blockers.

Closing ticket.

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Nowlan Freese added a comment - 29/Oct/24 1:21 PM Linux testing complete for release-10.1.0. No identified issues are release blockers. Closing ticket.