Revised inventory file by adding a new parameter early_access_branch - see below:

[targets]
ubuntubioviz2 ansible_host=52.207.108.150 domain=bioviz.org stack=Prod igb_branch=release-10.0.1 igb_version=10.0.1 igb_major_version=10 igb_repository=https://bitbucket.org/lorainelab/integrated-genome-browser bioviz_repo=https://bitbucket.org/lorainelab/bioviz.git bioviz_version=main hub_facade_domain=translate.bioviz.org maven_domain=maven.bioviz.org early_access_branch=release-10.1.0

[targets:vars]
ansible_ssh_common_args="-o StrictHostKeyChecking=no"
ansible_ssh_user=ubuntu

Updated security group to include a rule allowing ssh from my local machine's IP address.

Then, ran the playbooks with:

ansible-playbook -i inventory.ini setup.yml

with setup variables defined:

#
# Define the following variables to provision and update
# a BioViz host.
#

#
# certificate authority chain file, e.g., Digicert.crt
# put it in files directory
#
ssl_chain_file: STAR_bioviz_org.ca-bundle

#
# domain private key, e.g., star_mydomain.key
# put it in files directory
#
ssl_cert_key_file: bioviz.org.key

#
# domain certificate, e.g., star_mydomain.crt
# put it in files directory
#
ssl_cert_file: STAR_bioviz_org.crt

#
# e.g., 1.1.9
#
# See: https://bitbucket.org/lorainelab/genoviz-sdk
#
genoviz_version: 1.1.9

To test:

• Visit bioviz.org
• Follow "early access" links
• Download and install the early access IGB version
• Open Help > About IGB
• Confirm that the version listed there is 10.1.0
• Confirm that the commit hash listed there is the latest tip of branch release-10.1.0 from https://bitbucket.org/lorainelab/integrated-genome-browser

Early access download is for the branch "main" with commit id "6ce5a97812" so it doesn't look like the early access has the release-10.1.0 branch. Tested on Mac/Windows/Linux

Needed to modify a link in the HTML code. Added new task to bioviz-playbooks:

- name: Edit bioviz HTML to use correct early access link
  become: yes
  replace:
    regexp: "-main"
    path: "/var/www/{{ domain }}/htdocs/earlyAccessDownload.html"
    replace: "-{{ early_access_branch }}"

Deployed to bioviz.org host.

Confirmed that file IGB-macos-universal-release-10.1.0.dmg got downloaded when I clicked the early access installation download button.

Ready for testing.

Tested on Mac - the early access button is now downloading the IGB-macos-universal-release-10.1.0.dmg installer. This does have the release-10.1.0 branch, though the commit id (de7957f0) is behind the release-10.1.0 branch. The only difference is that it is missing a commit fixing a bug in DAS, so I think this is fine for the early access, but we will want to make sure that the official release has the bug fix. On the bitbucket downloads page the correct installer is from October 15 and is called IGB-macos-universal-10.1.0.dmg. It looks like Windows/Linux are also using the older release branch, though again this is fine for the early access.

Ann Loraine - I think we can close this ticket, as it is perfectly good for early access, but I'm moving it back to to do so you can decide.

Thanks for letting me know about the missing commit.

Update:

• Running the "build installers for dev" pipeline on branch release-10.1.0
• Also running the "release" pipeline on branch release-10.1.0

Probably I should not have run both pipelines. Pipeline "release" does exactly the same thing as "build installers for dev" pipeline plus makes a couple extra files

I have deployed the newly built installer to bioviz.org. Please check now. Also, it is now notarized.

Ann Loraine - Both Windows and Mac on the early access site are throwing security errors as if they are not signed/notarized. The name of the Windows file is not the same as the file I signed in IGBF-3964, can you check that the new files have been deployed to early access?

The problem was in how I specified the early access release branch. Our release branch pipeline includes only the version of IGB in the file name, not the branch name. I was able to fix the problem by re-running the playbooks with early accession branch variable set to 10.1.0 instead of release-10.1.0.

I downloaded the early access file for Mac and was able to install it without observing any warnings about an un-notarized application.

I don't understand how I missed this! Very bad

Early access is now pointing at main branch 10.2.0. I assume this is correct as we have now released 10.1.0. Tested on Mac and Windows.

Closing ticket.