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  1. IGB
  2. IGBF-3952

Explore Graph based aligning to pseudo pan genome

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Goal: to explore what it will take to do graph based alignments to multiple tomato sequence genomes.

      This is based on Liz's comments last week.

      This will also be valuable preliminary research into going after a future tomato pan genome on a larger scale.

        Attachments

          Activity

          robofjoy Robert Reid created issue -
          robofjoy Robert Reid made changes -
          Field Original Value New Value
          Epic Link IGBF-2993 [ 21429 ]
          robofjoy Robert Reid made changes -
          Description
          Goal: to explore what it will take to do graph based alignments to multiple tomato sequence genomes.

          This is based on Liz's comments last week.

          This will also be valuable preliminary research into going after a future tomato pan genome on a larger scale.

          Goal: to explore what it will take to do graph based alignments to multiple tomato sequence genomes.

          This is based on Liz's comments last week.

          This will also be valuable preliminary research into going after a future tomato pan genome on a larger scale.

          Sprint Fall 4 [ 205 ]
          robofjoy Robert Reid made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          ann.loraine Ann Loraine made changes -
          Sprint Fall 4 [ 205 ] Fall 4, Fall 5 [ 205, 206 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          robofjoy Robert Reid made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          robofjoy Robert Reid made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          robofjoy Robert Reid made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          robofjoy Robert Reid made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          robofjoy Robert Reid made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          robofjoy Robert Reid made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          robofjoy Robert Reid made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          robofjoy Robert Reid made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

            People

            • Assignee:
              robofjoy Robert Reid
              Reporter:
              robofjoy Robert Reid
            • Votes:
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              Watchers:
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              Dates

              • Created:
                Updated:
                Resolved: