Details
-
Type:
Task
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:None
-
Story Points:3
-
Epic Link:
-
Sprint:Fall 6, Fall 7, Winter 1
Description
GOAL:
To recreate what was done by others.
But we have better filtering to begin with.....
Once IGB-3998 is complete, run the filtered sequences through NEXTFLOW in the same manner as Molly's tomato runs..
Different reference of course, now we use human.
Once we get salmon table, we can move to a DESEq2 run.
Attachments
Issue Links
- is blocked by
-
-
- Closed
-
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Sprint | Fall 6 [ 207 ] | Fall 6, Fall 7 [ 207, 208 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Fall 6, Fall 7 [ 207, 208 ] | Fall 6, Fall 7, Fall 8 [ 207, 208, 209 ] |
| Rank | Ranked higher |
| Comment | [ FCS adaptor keeps dying due to BLAST step using up too much memory. I have gone up to 350gb per run and still running out of memory. Trying to find a way around this. ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Brandon Bendickson [ bbendick ] | Robert Reid [ robertreid ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |