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  1. IGB
  2. IGBF-4001

NEXTFLOW on Kausik's DBR1 sequences

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          GOAL:

          To recreate what was done by others.
          But we have better filtering to begin with.....

          Once IGB-3998 is complete, run the filtered sequences through NEXTFLOW in the same manner as Molly's tomato runs..

          Different reference of course, now we use human.

          Once we get salmon table, we can move to a DESEq2 run.

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              Task - A task that needs to be done. IGBF-3998 DBR1 gene filtering

              • Major - Major loss of function.
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                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    robofjoy Robert Reid
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                      Updated:
                      Resolved: