Details
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Type:
Task
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:4
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Epic Link:
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Sprint:Winter 1, Spring 1, Spring 2
Description
Situation: IGB has the ability to export tracks to a file on the user's computer. To do this, a user would right-click on the track label of the track they'd like to save and click Save Track As.... We've discovered a case where this option isn't available yet it should be, and that is in the case of exporting mismatch graphs.
Below is a step-by-step guide for creating a mismatch graph and attempting to export it:
- Start IGB
- Open the A_thaliana_Jun_2009 genome
- In the Available Data section, open the following file: RNA-Seq > Auxin arf19 > Reads > arf19-4 IAA alignments
- Navigate to Chr5:7,866,559-7,870,566
- Click Load Data
- Right-click on the "arf19-4 IAA alignments" track label
- Click Track Operations > Mismatch Graph
- Right-click on the "Mismatch Graph: arf19-4 IAA alignments (+|-)" track label
- See that the option to Save Track As... is grayed out.
Task: Investigate exporting mismatch graph tracks.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Assignee | saideepthi jagarapu [ sjagarap ] |
| Sprint | Winter 1 [ 209 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Winter 1 [ 209 ] | Winter 1, Spring 1 [ 209, 210 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | saideepthi jagarapu [ sjagarap ] |
| Attachment | export_mismatched_graph.png [ 18618 ] |
| Story Points | 2 | 4 |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] | saideepthi jagarapu [ sjagarap ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Sprint | Winter 1, Spring 1 [ 209, 210 ] | Winter 1, Spring 1, Spring 2 [ 209, 210, 211 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Winter 1, Spring 1, Spring 2 [ 209, 210, 211 ] | Winter 1, Spring 1, Spring 2, Spring 3 [ 209, 210, 211, 212 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Winter 1, Spring 1, Spring 2, Spring 3 [ 209, 210, 211, 212 ] | Winter 1, Spring 1, Spring 2 [ 209, 210, 211 ] |