Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Spring 1, Spring 2, Spring 3, Spring 4
Description
We are offering a genome assembly for painted lady as part of our Quickload site - see: http://igbquickload-main.bioviz.org/quickload/V_cardui_Feb_2021/
However, the in the HEADER file (see above link) does not have enough information for a user to locate the original files we used to create our IGB-friendly versions of the files. This can become a problem for users who are working with bioinformatics pipelines that use assembly or annotation files. They will need to know if the files we are showing in IGB are the same as the files they are working with, or not.
Also, it would be good to link to a research article describing this assembly, to help users learn more about this assembly.
For this task, improve the documentation so that a user who clicks the "get info" link within IGB will be able to find information needed to locate the original data files we used to create our IGB-friendly versions for the Quickload repository.
Notes:
- It looks like this might be "the" painted lady genome paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC10061037
Attachments
Issue Links
- relates to
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Description |
We are offering a genome assembly for painted lady as part of our Quickload site - see: http://igbquickload-main.bioviz.org/quickload/V_cardui_Feb_2021/
However, the in the HEADER file (see above link) does not have enough information for a user to locate the original files we used to create our IGB-friendly versions of the files. Also, it would be good to link to a research article describing this assembly. For this task, improve the documentation so that a user who clicks the "get info" link within IGB will be able to find information needed to locate the original data files we used to create our IGB-friendly versions for the Quickload repository. Notes: * It looks like this might be "the" painted lady genome paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC10061037 |
We are offering a genome assembly for painted lady as part of our Quickload site - see: http://igbquickload-main.bioviz.org/quickload/V_cardui_Feb_2021/
However, the in the HEADER file (see above link) does not have enough information for a user to locate the original files we used to create our IGB-friendly versions of the files. This can become a problem for users who are working with bioinformatics pipelines that use assembly or annotation files. They will need to know if the files we are showing in IGB are the same as the files they are working with, or not. Also, it would be good to link to a research article describing this assembly, to help users learn more about this assembly. For this task, improve the documentation so that a user who clicks the "get info" link within IGB will be able to find information needed to locate the original data files we used to create our IGB-friendly versions for the Quickload repository. Notes: * It looks like this might be "the" painted lady genome paper: https://pmc.ncbi.nlm.nih.gov/articles/PMC10061037 |
| Assignee | Paige Kulzer [ pkulzer ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Attachment | HEADER.md [ 18616 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] | Paige Kulzer [ pkulzer ] |
| Sprint | Spring 1 [ 210 ] | Spring 1, Spring 2 [ 210, 211 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Attachment | HEADER_V2.md [ 18636 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Sprint | Spring 1, Spring 2 [ 210, 211 ] | Spring 1, Spring 2, Spring 3 [ 210, 211, 212 ] |
| Rank | Ranked higher |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Paige Kulzer [ pkulzer ] |
| Sprint | Spring 1, Spring 2, Spring 3 [ 210, 211, 212 ] | Spring 1, Spring 2, Spring 3, Spring 4 [ 210, 211, 212, 213 ] |
| Rank | Ranked higher |
| Assignee | Paige Kulzer [ pkulzer ] | Ann Loraine [ aloraine ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Ann Loraine [ aloraine ] | Paige Kulzer [ pkulzer ] |