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  1. IGB
  2. IGBF-4042

De novo annotations of Kelsey genes that have no matches

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          GOAL:
          This is will be a larger task that will need smaller stories.
          To apply annotations to all genes that were created via RNA-Spades that happen to fail to align back to any genes in the SL5 reference genome.

          We have summarized the contigs already.
          Can be seen here:
          https://drive.google.com/drive/folders/1yCTqt8nW_UjcDp17Z0gk0SCjkF06qPmJ?usp=drive_link

          Taking all the genes with no matches, we will run them through Braker and Interproscan (new sub tasks).

          First here, we will isolate those genes for each variety.

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              robofjoy Robert Reid added a comment -

              This will soon be closed and broken into smaller tasks.

              Transdecoder etc..... Unigene maybe.

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              robofjoy Robert Reid added a comment - This will soon be closed and broken into smaller tasks. Transdecoder etc..... Unigene maybe.

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                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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                  • Created:
                    Updated:
                    Resolved: