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  1. IGB
  2. IGBF-4045

NEXTFLOW using TSA contigs as reference, using raw reads as input

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          GOAL: Another NEXTFLOW run using the TSA contigs as the reference.
          We use the reads of Kelsies just like the original expt.

          1. get NEXTFLOW to run
          2. Summarize the alignments

          Once this is done, we make a new ticket and start DESEQ2 * 4 varieties and compare time points and overall general patterns if there are any.

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                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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