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  1. IGB
  2. IGBF-4057

Identify # of P-adjusted genes from Deseq2 on TSA results X4

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          GOAL:
          To identify from the Deseq results, how many genes are significant < 0.05 (P-adjusted)
          for each variety. (4 total results to be generated)

          Take final column (padj), sort of low to high, count how many matter.......

          save as 1 big excel sheet, each tab can be a plant variety. Save to Tomato Folder in Google drive.

          This location:
          https://drive.google.com/drive/folders/1CqpyU54hh3HP8RXnu8KG0VrLCdlJB7Ct?usp=drive_link

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              bbendick Brandon Bendickson added a comment -

              Created sheet and placed it into google drive location.
              Quick summary of results:

              Number of contigs with Padj < 0.05
              Heinz: 2005
              Mal: 3858
              Tam: 6875
              Nag: 4347

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              bbendick Brandon Bendickson added a comment - Created sheet and placed it into google drive location. Quick summary of results: Number of contigs with Padj < 0.05 Heinz: 2005 Mal: 3858 Tam: 6875 Nag: 4347

                People

                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  robofjoy Robert Reid
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                  • Created:
                    Updated:
                    Resolved: