Details
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Type:
Bug
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Status: In Progress (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Winter 1
Description
Situation: A GFF file that has been converted to a BED file is throwing an error "WARNING!!! Lengths disagree: residues = 8043, seq = 8041.0". When uploading the converted BED file prodigal_Lambda_phage_sequences.bed
and running ProtAnnot, an error occurs.
Task: Investigate why the GFF-to-BED conversion is causing the error in ProtAnnot.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1908 [ 17998 ] |
| Link | This issue relates to IGBF-4008 [ IGBF-4008 ] |
| Sprint | Winter 1 [ 209 ] | Winter 1, Spring 1 [ 209, 210 ] |
| Rank | Ranked higher |
| Attachment | prodigal_Lambda_phage_sequences.bed [ 18615 ] |
| Description |
Situation:
Task: |
Situation: A GFF file that has been converted to a BED file is throwing an error due to improper loading of residues. When uploading the converted BED file [^prodigal_Lambda_phage_sequences.bed] and running ProtAnnot, an error occurs. Upon checking the genomic sequence, it contains "-" symbols, which is unexpected.
Task: Investigate why the GFF-to-BED conversion is causing the error in ProtAnnot, specifically examining the genomic sequence for the unexpected "-" symbols. |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Description |
Situation: A GFF file that has been converted to a BED file is throwing an error due to improper loading of residues. When uploading the converted BED file [^prodigal_Lambda_phage_sequences.bed] and running ProtAnnot, an error occurs. Upon checking the genomic sequence, it contains "-" symbols, which is unexpected.
Task: Investigate why the GFF-to-BED conversion is causing the error in ProtAnnot, specifically examining the genomic sequence for the unexpected "-" symbols. |
Situation: A GFF file that has been converted to a BED file is throwing an error ". When uploading the converted BED file [^prodigal_Lambda_phage_sequences.bed] and running ProtAnnot, an error occurs.
Task: Investigate why the GFF-to-BED conversion is causing the error in ProtAnnot, specifically examining the genomic sequence for the unexpected "-" symbols. |
| Description |
Situation: A GFF file that has been converted to a BED file is throwing an error ". When uploading the converted BED file [^prodigal_Lambda_phage_sequences.bed] and running ProtAnnot, an error occurs.
Task: Investigate why the GFF-to-BED conversion is causing the error in ProtAnnot, specifically examining the genomic sequence for the unexpected "-" symbols. |
Situation: A GFF file that has been converted to a BED file is throwing an error "WARNING!!! Lengths disagree: residues = 8043, seq = 8041.0". When uploading the converted BED file [^prodigal_Lambda_phage_sequences.bed] and running ProtAnnot, an error occurs.
Task: Investigate why the GFF-to-BED conversion is causing the error in ProtAnnot. |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Winter 1, Spring 1 [ 209, 210 ] | Winter 1, Spring 3 [ 209, 212 ] |
| Sprint | Winter 1, Spring 3 [ 209, 212 ] | Winter 1 [ 209 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |