Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4062

Investigate bed and gff parsing issues with ProtAnnot

        Details

        • Type: Bug
        • Status: In Progress (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: A GFF file that has been converted to a BED file is throwing an error "WARNING!!! Lengths disagree: residues = 8043, seq = 8041.0". When uploading the converted BED file prodigal_Lambda_phage_sequences.bed and running ProtAnnot, an error occurs.

          Task: Investigate why the GFF-to-BED conversion is causing the error in ProtAnnot.

            Attachments

              Activity

              No work has yet been logged on this issue.

                People

                • Assignee:
                  uchinta Udaya Chinta (Inactive)
                  Reporter:
                  nfreese Nowlan Freese
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  2 Start watching this issue

                  Dates

                  • Created:
                    Updated: