Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
Description
Situation: While working on IGBF-3409, I discovered that a new version of the bread wheat genome (T_aestivum_May_2021) has been released to NCBI.
Task: Add the latest T. aestivum genome assembly (IWGSC CS RefSeq v2.1) to IGB.
Link to data: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_018294505.1/
Documentation: https://docs.google.com/document/d/1v9caFNNQK-Az_7ztAV6TTMUbm9LUajvbnD-QBJpcSwY/edit?usp=sharing
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1395 [ 17470 ] |
| Sprint | Spring 1 [ 210 ] | Spring 2 [ 211 ] |
| Sprint | Spring 2 [ 211 ] | Spring 3 [ 212 ] |
| Sprint | Spring 3 [ 212 ] | Spring 4 [ 213 ] |
| Rank | Ranked lower |
| Rank | Ranked lower |
| Sprint | Spring 4 [ 213 ] | Spring 5 [ 214 ] |
| Rank | Ranked lower |
| Sprint | Spring 5 [ 214 ] |
| Rank | Ranked higher |
This genome will be added as part of the upcoming GenArk integration (see https://hgdownload.soe.ucsc.edu/hubs/plants/index.html). Closing this ticket!
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Note from Ann:
Please DO NOT add the 2bit file for this genome to the version control subversion system. Use the "file" tag to point to a 2bit file hosted elsewhere. This is because the data file is too large and costly to host using our infrastructure. We should use other groups to host this ginormous data file for us, or use a different deployment method, not amazon EBS, which is what our subversion repository uses.