[IGBF-4076] Update Kelsey PCA axis to zoom in closer - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
1
Epic Link:
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Sprint:
Spring 1

Description

GOAL: Redo the PCA's from the reference free pipeline to be zoomed in further so we can see the separation better.

Which PCAs?
Each tissue gets it own PCA. (2)
each variety get its own PCA. (4)

Symbols will be temperature.
Colors will be time.

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Activity

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Robert Reid created issue - 28/Jan/25 1:24 PM

Robert Reid made changes - 28/Jan/25 1:24 PM

Field	Original Value	New Value
Epic Link		IGBF-2993 [ 21429 ]

Brandon Bendickson made changes - 29/Jan/25 9:24 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

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Brandon Bendickson added a comment - 03/Feb/25 2:04 PM

Changed the axes of all pcas to fit their respective results. Moving to review, assign back to me if further changes are needed.

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Brandon Bendickson added a comment - 03/Feb/25 2:04 PM Changed the axes of all pcas to fit their respective results. Moving to review, assign back to me if further changes are needed.

Brandon Bendickson made changes - 03/Feb/25 2:04 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Brandon Bendickson made changes - 03/Feb/25 2:04 PM

Assignee

Brandon Bendickson [ bbendick ]

Robert Reid [ robertreid ]

Nowlan Freese made changes - 05/Feb/25 10:11 AM

Summary

Update Keslie PCA axis to zoom in closer

Update Kelsey PCA axis to zoom in closer

Robert Reid made changes - 07/Feb/25 9:57 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Robert Reid made changes - 07/Feb/25 9:57 AM

Status

First Level Review in Progress [ 10301 ]

To-Do [ 10305 ]

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Robert Reid added a comment - 07/Feb/25 10:01 AM

Better!
I think we still need to restrain the X and Y axis to be the same coordinates.

So that means you go choose an X-axis that best shows the separation. And then whatever you chose for X you also apply to Y-axis.
This will squish things along the y-axis and that is OK, because it shows that relative to the X-axis, it is less important. (and that should be reflected int he PCA #'s we see too.

In Heinz, we see that 78% of the variance is explained along the X axis. The Y only contributes 13.4%.

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Robert Reid added a comment - 07/Feb/25 10:01 AM Better! I think we still need to restrain the X and Y axis to be the same coordinates. So that means you go choose an X-axis that best shows the separation. And then whatever you chose for X you also apply to Y-axis. This will squish things along the y-axis and that is OK, because it shows that relative to the X-axis, it is less important. (and that should be reflected int he PCA #'s we see too. In Heinz, we see that 78% of the variance is explained along the X axis. The Y only contributes 13.4%.

Robert Reid made changes - 07/Feb/25 10:02 AM

Assignee

Robert Reid [ robertreid ]

Brandon Bendickson [ bbendick ]

Brandon Bendickson made changes - 07/Feb/25 10:20 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]