Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 1
Description
GOAL: Redo the PCA's from the reference free pipeline to be zoomed in further so we can see the separation better.
Which PCAs?
Each tissue gets it own PCA. (2)
each variety get its own PCA. (4)
Symbols will be temperature.
Colors will be time.
Attachments
Activity
Changed the axes of all pcas to fit their respective results. Moving to review, assign back to me if further changes are needed.
Better!
I think we still need to restrain the X and Y axis to be the same coordinates.
So that means you go choose an X-axis that best shows the separation. And then whatever you chose for X you also apply to Y-axis.
This will squish things along the y-axis and that is OK, because it shows that relative to the X-axis, it is less important. (and that should be reflected int he PCA #'s we see too.
In Heinz, we see that 78% of the variance is explained along the X axis. The Y only contributes 13.4%.