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  1. IGB
  2. IGBF-4077

VENN diagram of overlapping genes from De novo

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          GOAL: Since we have BLAT mapped most of our de novo genes to SL5, we can produce a large VENN diagram (or UpsetR plot) of how much overlap there is for each time point/temp condition.

          Exploit the SolyId imbedded in the fasta header (Brandon created these after the BLAT step).
          For an experiment group X4 varieties, we just tally up how often we see a gene.

          This gets repeated for each time point. This is about the only way we can get back to comparing across varieties.

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                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  robofjoy Robert Reid
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                    Updated:
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