Testing verifies that using the Advanced Search 9 times in a row no longer causes search to fail and no longer generates an exception. A user can now search as many times as they want and the 8 colors continue to cycle.

Since this story is resolved it will now be closed.

13:28:53.358 INFO com.affymetrix.igb.Application - Copied 36 residues from selected region to clipboard
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException: 8
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at javax.swing.SwingWorker.get(SwingWorker.java:602)
at com.affymetrix.igb.search.SearchView$SearchAction$1.finished(SearchView.java:170)
at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:47)
at javax.swing.SwingWorker$5.run(SwingWorker.java:737)
at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:832)
at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:112)
at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:842)
at javax.swing.Timer.fireActionPerformed(Timer.java:313)
at javax.swing.Timer$DoPostEvent.run(Timer.java:245)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:744)
at java.awt.EventQueue.access$400(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:697)
at java.awt.EventQueue$3.run(EventQueue.java:691)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:714)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.ArrayIndexOutOfBoundsException: 8
at com.affymetrix.igb.search.SearchModeResidue.search(SearchModeResidue.java:295)
at com.affymetrix.igb.search.SearchModeResidue.searchResidue(SearchModeResidue.java:251)
at com.affymetrix.igb.search.SearchView$SearchAction$1.runInBackground(SearchView.java:135)
at com.affymetrix.igb.search.SearchView$SearchAction$1.runInBackground(SearchView.java:130)
at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:69)
at javax.swing.SwingWorker$1.call(SwingWorker.java:295)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at javax.swing.SwingWorker.run(SwingWorker.java:334)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

*From Ivory:

IGB hangs on advanced search of nucleotide sequences. I did several searches and they all worked until the peach color had been used (even if there were no peach results to show). After that, if tried a new residue search it just searched indefinitely until I restarted the program. Its like it doesn’t want to admit that it has run out of colors. Even if a search has no results, if you hit the search button several times, each one is a search and uses a color and after 9?, it will hang. I could avoid the hang by clearing search results when I got to peach.