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  1. IGB
  2. IGBF-4090

Investigate IGB Quickload to UCSC track hub converter

    Details

    • Type: New Feature
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Situation: UCSC genome browser has track data hubs that are similar to IGB Quickloads. We have previously created a website to convert UCSC track hubs to IGB Quickloads (see IGBF-2831). We would now like to add the ability to convert an IGB Quickload to a UCSC track hub.

      Task: Investigate how our current website is converting UCSC track hubs to IGB Quickloads

      Track hub converter website: https://translate.bioviz.org/
      Bitbucket repo: https://bitbucket.org/lorainelab/hub-facade/src/main/

        Attachments

        1. genomes.txt
          0.0 kB
        2. hub.txt
          0.2 kB
        3. screenshot-1.png
          screenshot-1.png
          175 kB
        4. trackDb.txt
          2 kB

          Issue Links

            Activity

            nfreese Nowlan Freese created issue -
            nfreese Nowlan Freese made changes -
            Field Original Value New Value
            Epic Link IGBF-2831 [ 19524 ]
            nfreese Nowlan Freese made changes -
            Description Situation: UCSC genome browser has track data hubs that are similar to IGB Quickloads. We have previously created a website to convert UCSC track hubs to IGB Quickloads (see IGBF-2831). We would now like to add the ability to convert an IGB Quickload to a UCSC track hub.

            Task: Investigate how our current website is converting UCSC track hubs to IGB Quickloads

            Track hub converter website: translate.bioviz.org/
            Situation: UCSC genome browser has track data hubs that are similar to IGB Quickloads. We have previously created a website to convert UCSC track hubs to IGB Quickloads (see IGBF-2831). We would now like to add the ability to convert an IGB Quickload to a UCSC track hub.

            Task: Investigate how our current website is converting UCSC track hubs to IGB Quickloads

            Track hub converter website: https://translate.bioviz.org/
            Bitbucket repo: https://bitbucket.org/lorainelab/hub-facade/src/main/
            uchinta Udaya Chinta (Inactive) made changes -
            Attachment screenshot-1.png [ 18626 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Attachment hub.txt [ 18627 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Attachment genomes.txt [ 18628 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Attachment trackDb.txt [ 18629 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            ann.loraine Ann Loraine made changes -
            Sprint Spring 1 [ 210 ] Spring 1, Spring 2 [ 210, 211 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            nfreese Nowlan Freese made changes -
            Story Points 2 4
            uchinta Udaya Chinta (Inactive) made changes -
            Story Points 4 2
            uchinta Udaya Chinta (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Link This issue relates to IGBF-4104 [ IGBF-4104 ]
            uchinta Udaya Chinta (Inactive) made changes -
            Link This issue relates to IGBF-4105 [ IGBF-4105 ]

              People

              • Assignee:
                uchinta Udaya Chinta (Inactive)
                Reporter:
                nfreese Nowlan Freese
              • Votes:
                0 Vote for this issue
                Watchers:
                2 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: