Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4090

Investigate IGB Quickload to UCSC track hub converter

        Details

        • Type: New Feature
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: UCSC genome browser has track data hubs that are similar to IGB Quickloads. We have previously created a website to convert UCSC track hubs to IGB Quickloads (see IGBF-2831). We would now like to add the ability to convert an IGB Quickload to a UCSC track hub.

          Task: Investigate how our current website is converting UCSC track hubs to IGB Quickloads

          Track hub converter website: https://translate.bioviz.org/
          Bitbucket repo: https://bitbucket.org/lorainelab/hub-facade/src/main/

            Attachments

            1. genomes.txt
              0.0 kB
            2. hub.txt
              0.2 kB
            3. screenshot-1.png
              screenshot-1.png
              175 kB
            4. trackDb.txt
              2 kB

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-4105 Create hub.txt file and genomes.txt file for quickload to track hub conversion

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed

              Task - A task that needs to be done. IGBF-4104 Create a POC for track hub converter

              • Major - Major loss of function.
              • Closed

                Activity

                No work has yet been logged on this issue.

                  People

                  • Assignee:
                    uchinta Udaya Chinta (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: