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  1. IGB
  2. IGBF-4095

4 bar graphs (4 varierties) from the FCS filtering

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          GOAL: Using Brandon's spreadsheet below, make 4 bar graphs, one for each variety. each bar graph will have 3 bars:
          1. prefilter
          2. After adapter
          3. After adapter and contaminant filtering.

          The numbers that Brandon produced are here:

          https://docs.google.com/spreadsheets/d/1fWZn0HTq1ZfM0hrL02CjD0nZ_5Q2frCkYH2945yOZDU/edit?gid=0#gid=0

          This becomes a single slide in the presentation:
          https://docs.google.com/presentation/d/1qhQQw_Sc_AsUTJZXr1j3G6p7DQ_4fFveYpDst9jh13E/edit?usp=sharing

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              bbendick Brandon Bendickson added a comment -

              Made colored bar graphs, and added them to slides.

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              bbendick Brandon Bendickson added a comment - Made colored bar graphs, and added them to slides.
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              robofjoy Robert Reid added a comment -

              I think we do a bar graph of # of Nucleotides removed.
              From the residue counts row, use these #'s.

              We can't do # of sequences because we actually increase that # by splitting some of our contigs.

              The average length barely moves so it is not worth reporting.

              Show
              robofjoy Robert Reid added a comment - I think we do a bar graph of # of Nucleotides removed. From the residue counts row, use these #'s. We can't do # of sequences because we actually increase that # by splitting some of our contigs. The average length barely moves so it is not worth reporting.

                People

                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  robofjoy Robert Reid
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