Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Minor
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:4
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Epic Link:
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Sprint:Spring 2, Spring 3, Spring 4, Spring 5, Spring 6
Description
As part of quickload to trackhub conversion, we need to generate hub.txt file.
Sample hub.txt :
hub IGBQuickLoad
shortLabel IGB QUICK LOAD
longLabel Generated from IGB QuickLoad
genomesFile genomes.txt
email myEmail@address
api : https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/trackHub2/hub.txt
Sample genome.txt:
genome tair9
trackDb tair9/trackDb.txt
organism araTha
defaultPos Chr1:0-30427671
twoBitPath http://igbquickload.org/quickload/A_thaliana_Jun_2009/A_thaliana_Jun_2009.2bit
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1908 [ 17998 ] |
| Epic Link | IGBF-1908 [ 17998 ] | IGBF-2831 [ 19524 ] |
| Summary | Develop code to convert quickload to trackhubs | Create hub.txt file for quickload to track hub conversion |
| Description |
As part of quickload to trackhub conversion, we need to generate hub.txt file.
Sample hub.txt : hub IGBQuickLoad shortLabel IGB QUICK LOAD longLabel Generated from IGB QuickLoad genomesFile genomes.txt email myEmail@address api : https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/trackHub2/hub.txt |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 2 [ 211 ] | Spring 2, Spring 3 [ 211, 212 ] |
| Rank | Ranked higher |
| Story Points | 2 | 4 |
| Summary | Create hub.txt file for quickload to track hub conversion | Create hub.txt file and genomes.txt file for quickload to track hub conversion |
| Description |
As part of quickload to trackhub conversion, we need to generate hub.txt file.
Sample hub.txt : hub IGBQuickLoad shortLabel IGB QUICK LOAD longLabel Generated from IGB QuickLoad genomesFile genomes.txt email myEmail@address api : https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/trackHub2/hub.txt |
As part of quickload to trackhub conversion, we need to generate hub.txt file.
Sample hub.txt : hub IGBQuickLoad shortLabel IGB QUICK LOAD longLabel Generated from IGB QuickLoad genomesFile genomes.txt email myEmail@address sample genome.txt api : https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/trackHub2/hub.txt |
| Description |
As part of quickload to trackhub conversion, we need to generate hub.txt file.
Sample hub.txt : hub IGBQuickLoad shortLabel IGB QUICK LOAD longLabel Generated from IGB QuickLoad genomesFile genomes.txt email myEmail@address sample genome.txt api : https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/trackHub2/hub.txt |
As part of quickload to trackhub conversion, we need to generate hub.txt file.
*Sample hub.txt :* hub IGBQuickLoad shortLabel IGB QUICK LOAD longLabel Generated from IGB QuickLoad genomesFile genomes.txt email myEmail@address *api* : https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/trackHub2/hub.txt *Sample genome.txt:* genome tair9 trackDb tair9/trackDb.txt organism araTha defaultPos Chr1:0-30427671 twoBitPath http://igbquickload.org/quickload/A_thaliana_Jun_2009/A_thaliana_Jun_2009.2bit *api* : https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/trackHub2/genomes.txt |
| Sprint | Spring 2, Spring 3 [ 211, 212 ] | Spring 2, Spring 3, Spring 4 [ 211, 212, 213 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Udaya Chinta [ uchinta ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] | Udaya Chinta [ uchinta ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 2, Spring 3, Spring 4 [ 211, 212, 213 ] | Spring 2, Spring 3, Spring 4, Spring 5 [ 211, 212, 213, 214 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Udaya Chinta [ uchinta ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Sprint | Spring 2, Spring 3, Spring 4, Spring 5 [ 211, 212, 213, 214 ] | Spring 2, Spring 3, Spring 4, Spring 5, Spring 6 [ 211, 212, 213, 214, 215 ] |
| Rank | Ranked higher |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] | Udaya Chinta [ uchinta ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Udaya Chinta [ uchinta ] | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Link | This issue relates to IGBF-4192 [ IGBF-4192 ] |
| Assignee | Nowlan Freese [ nfreese ] | Udaya Chinta [ uchinta ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |