Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4106

Integrate htsjdk library for parsing VCF in IGB

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: 10.2.0
        • Labels:
          None

          Description

          Situation: VCF file is being read line by line manually

          Task: Investigate how we could integrate htsjdk library to make use of in-built classes instead of manual processing of vcf file

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-4082 Investigate: How is IGB parsing and displaying VCF files?

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-4083 Investigate: How is IGV parsing and displaying VCF files?

              • Major - Major loss of function.
              • Closed
              is cloned by

              Task - A task that needs to be done. IGBF-4153 Eliminate lineProcessor implementation in VCF loader in IGB

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-4219 Fix loading remote VCF files

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    sjagarap saideepthi jagarapu (Inactive)
                    Reporter:
                    sjagarap saideepthi jagarapu (Inactive)
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: