Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4112

2025 Update Galaxy dbkey values in IGB synonyms.txt

    Details

    • Type: Task
    • Status: To-Do (View Workflow)
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Situation: usegalaxy.org website is used frequently by IGB users. When a user views data from Galaxy in IGB we attempt to load the appropriate genome in IGB. Many of the genomes line up with and use the same nomenclature as Galaxy, but there are now many more genomes in Galaxy.

      Task: Update the IGB synonyms.txt with any missing Galaxy synonyms. See IGBF-1879 for additional details.

      Galaxy genome API: https://usegalaxy.org/api/genomes
      Galaxy Europe genome API: https://usegalaxy.eu/api/genomes
      UCSC genome API (for comparison, this should be up to date in IGB already): https://api.genome.ucsc.edu/list/ucscGenomes

        Attachments

          Issue Links

            Activity

            nfreese Nowlan Freese created issue -
            nfreese Nowlan Freese made changes -
            Field Original Value New Value
            Epic Link IGBF-1880 [ 17970 ]
            nfreese Nowlan Freese made changes -
            Link This issue relates to IGBF-1879 [ IGBF-1879 ]
            nfreese Nowlan Freese made changes -
            Description Situation: usegalaxy.org website is used frequently by IGB users. When a user views data from Galaxy in IGB we attempt to load the appropriate genome in IGB. Many of the genomes line up with and use the same nomenclature as Galaxy, but there are now many more genomes in Galaxy.

            Task: Update the IGB synonyms.txt with any missing Galaxy synonyms.

            Galaxy genome API: https://usegalaxy.org/api/genomes
            Galaxy Europe genome API: https://usegalaxy.eu/api/genomes
            UCSC genome API (for comparison, this should be up to date in IGB already): https://api.genome.ucsc.edu/list/ucscGenomes
            Situation: usegalaxy.org website is used frequently by IGB users. When a user views data from Galaxy in IGB we attempt to load the appropriate genome in IGB. Many of the genomes line up with and use the same nomenclature as Galaxy, but there are now many more genomes in Galaxy.

            Task: Update the IGB synonyms.txt with any missing Galaxy synonyms. See IGBF-1879 for additional details.

            Galaxy genome API: https://usegalaxy.org/api/genomes
            Galaxy Europe genome API: https://usegalaxy.eu/api/genomes
            UCSC genome API (for comparison, this should be up to date in IGB already): https://api.genome.ucsc.edu/list/ucscGenomes
            pkulzer Paige Kulzer made changes -
            Assignee Paige Kulzer [ pkulzer ]
            pkulzer Paige Kulzer made changes -
            Sprint Spring 3 [ 212 ] Spring 4 [ 213 ]

              People

              • Assignee:
                pkulzer Paige Kulzer
                Reporter:
                nfreese Nowlan Freese
              • Votes:
                0 Vote for this issue
                Watchers:
                Start watching this issue

                Dates

                • Created:
                  Updated: