Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 6, Summer 4
Description
Situation: usegalaxy.org website is used frequently by IGB users. When a user views data from Galaxy in IGB we attempt to load the appropriate genome in IGB. Many of the genomes line up with and use the same nomenclature as Galaxy, but there are now many more genomes in Galaxy.
Task: Update the IGB synonyms.txt with any missing Galaxy synonyms. See IGBF-1879 for additional details.
Galaxy genome API: https://usegalaxy.org/api/genomes
Galaxy Europe genome API: https://usegalaxy.eu/api/genomes
UCSC genome API (for comparison, this should be up to date in IGB already): https://api.genome.ucsc.edu/list/ucscGenomes