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  1. IGB
  2. IGBF-4120

CDHIT on Transdecoder Proteins

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          GOAL: To find highly similar protein cluster via CDHIT.

          Need to see if this is a module already on the cluster.
          If not, need to figure out installation.
          Need to create a script to run.

          We run CDHIT on each Transdecoder run we produce.

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              robofjoy Robert Reid created issue -
              robofjoy Robert Reid made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              robofjoy Robert Reid made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              bbendick Brandon Bendickson made changes -
              Assignee Robert Reid [ robertreid ] Brandon Bendickson [ bbendick ]
              bbendick Brandon Bendickson made changes -
              Assignee Brandon Bendickson [ bbendick ] Robert Reid [ robertreid ]
              bbendick Brandon Bendickson made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Sprint Spring 3 [ 212 ] Spring 3, Spring 4 [ 212, 213 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              robofjoy Robert Reid made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              robofjoy Robert Reid made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              robofjoy Robert Reid made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              robofjoy Robert Reid made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              robofjoy Robert Reid made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              robofjoy Robert Reid made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              robofjoy Robert Reid made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                People

                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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                  Dates

                  • Created:
                    Updated:
                    Resolved: