Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4128

Summarize the Transdecoder step as tables

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      GOAL:

      We need to summarize the results from IGBF-4114.
      A Table or 2.
      Using the tool seqinfo, it will summarize any of the fasta results. (the .cds and .pep files)

      How many sequences we have.
      The average size.
      The max and min sizes.

      Repeat for both the unfiltered and FCS filtered.

        Attachments

          Activity

          robofjoy Robert Reid created issue -
          robofjoy Robert Reid made changes -
          Field Original Value New Value
          Epic Link IGBF-2993 [ 21429 ]
          bbendick Brandon Bendickson made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          bbendick Brandon Bendickson made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          bbendick Brandon Bendickson made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          bbendick Brandon Bendickson made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          bbendick Brandon Bendickson made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          bbendick Brandon Bendickson made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          bbendick Brandon Bendickson made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          bbendick Brandon Bendickson made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          bbendick Brandon Bendickson made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

            People

            • Assignee:
              bbendick Brandon Bendickson
              Reporter:
              robofjoy Robert Reid
            • Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: