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  1. IGB
  2. IGBF-4128

Summarize the Transdecoder step as tables

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          GOAL:

          We need to summarize the results from IGBF-4114.
          A Table or 2.
          Using the tool seqinfo, it will summarize any of the fasta results. (the .cds and .pep files)

          How many sequences we have.
          The average size.
          The max and min sizes.

          Repeat for both the unfiltered and FCS filtered.

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              bbendick Brandon Bendickson added a comment -

              Summarized transdecoder steps in this sheet: https://docs.google.com/spreadsheets/d/19cnU0X3ftUOPrUgYDHbGHlvbAYfMWQeLDjN7zyBrjJQ/edit?usp=sharing

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              bbendick Brandon Bendickson added a comment - Summarized transdecoder steps in this sheet: https://docs.google.com/spreadsheets/d/19cnU0X3ftUOPrUgYDHbGHlvbAYfMWQeLDjN7zyBrjJQ/edit?usp=sharing

                People

                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  robofjoy Robert Reid
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                    Updated:
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