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  1. IGB
  2. IGBF-4130

Remove older 2bit files and point at UCSC hosted 2bit files in annots.xml

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Situation: We are hosting our subversion repository on our own EC2. The larger size of the repository is expensive.

          Task: Remove the 2bit file from the svn repository for older "legacy" genome versions, such as older versions of the human or mouse genomes. Then use the annots.xml "name" attribute to point to that same file hosted on the UCSC Genome Web (link: https://hgdownload.soe.ucsc.edu/gbdb/) and set "reference" to true (see https://wiki.bioviz.org/confluence/display/igbman/About+annots.xml for more details).

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              relates to

              New Feature - A new feature of the product, which has yet to be developed. IGBF-2537 Enable Quickload to specify the 2bit file for a genome

              • Major - Major loss of function.
              • Closed

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                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    nfreese Nowlan Freese
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                    • Created:
                      Updated:
                      Resolved: