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  1. IGB
  2. IGBF-4140

Generate trackDb.txt file

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Sample trackDb.txt:
          track Araport
          bigDataUrl https://bitbucket.org/lorainelab_udaya/testquickload/downloads/Araport11.bb
          shortLabel Araport 2019
          longLabel Protein-coding gene models from Araport 11, Nov. 2015
          type bigBed 12 +
          visibility dense

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              relates to

              Task - A task that needs to be done. IGBF-4162 Make required changes in front end for quickload to trackhub conversion

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed

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                nfreese Nowlan Freese added a comment -

                Testing on Chrome:
                The trackDb.txt appears correct: https://translate.bioviz.org/api/igbTrackHubs?quickLoadUrl=https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/quickload1&filePath=/A_thaliana_Jun_2009/trackDb.txt

                However, this does not work when I add it as a UCSC Track Hub. I have created IGBF-4192 to further test this.

                As the trackDb.txt is being returned, closing ticket.

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                nfreese Nowlan Freese added a comment - Testing on Chrome: The trackDb.txt appears correct: https://translate.bioviz.org/api/igbTrackHubs?quickLoadUrl=https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/quickload1&filePath=/A_thaliana_Jun_2009/trackDb.txt However, this does not work when I add it as a UCSC Track Hub. I have created IGBF-4192 to further test this. As the trackDb.txt is being returned, closing ticket.
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                uchinta Udaya Chinta (Inactive) added a comment -

                I created this ticket for tracking purpose but made changes as part of 4105.

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                uchinta Udaya Chinta (Inactive) added a comment - I created this ticket for tracking purpose but made changes as part of 4105.
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                uchinta Udaya Chinta (Inactive) added a comment -

                Commit 3:
                changes to generate trackDb.txt
                trackDb.txt : http://127.0.0.1:8000/api/igbTrackHubs?quickLoadUrl=http://igbquickload.org/quickload&filePath=/ce6/trackDb.txt

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                uchinta Udaya Chinta (Inactive) added a comment - Commit 3: changes to generate trackDb.txt trackDb.txt : http://127.0.0.1:8000/api/igbTrackHubs?quickLoadUrl=http://igbquickload.org/quickload&filePath=/ce6/trackDb.txt

                  People

                  • Assignee:
                    uchinta Udaya Chinta (Inactive)
                    Reporter:
                    uchinta Udaya Chinta (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: