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  1. IGB
  2. IGBF-4150

Repeating Molly's NEXTFLOW on Kelsie data

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          Purpose: To repeat Molly's NEXTFLOW run on Kelsie data. This will get used in Ticket IGB-4149 )?) to compare to de novo pipeline made by Brandon.

          How much overlap?
          Total gene counts?
          Variety differences, especially Heinz?)

          End result is Deseq results table and it's location here:
          Add summary to the Spring google slide deck:
          https://docs.google.com/presentation/d/1OuH_0-aDuzL2f9JXPBQGLzbAeENFlwohNuRuv2CdM-4/edit?usp=sharing

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              bbendick Brandon Bendickson added a comment -

              All 4 NEXTFLOW runs with Kelsie data completed successfully. Gonna start working towards integrating results into DESEQ script.

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              bbendick Brandon Bendickson added a comment - All 4 NEXTFLOW runs with Kelsie data completed successfully. Gonna start working towards integrating results into DESEQ script.

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                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  robofjoy Robert Reid
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                    Updated:
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