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  1. IGB
  2. IGBF-4155

HEATMAPS for Kelsey data 25C and 37C

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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            Task - A task that needs to be done. IGBF-4154 Kelsey run Get gene differentiation btw 25C and 37C-Unpollinated pistil study

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              robofjoy Robert Reid added a comment -

              Make a heat map of these genes like Figure 13D in Anthony's paper, where each cultivar and temp is on the x-axis (8 sections with 2 time points each = 16 columns to show gene expression levels), and genes are on the y-axis.
              This heat map could be made for only the genes significantly changing for all temps/time points/cultivars, and another heat map could be made for the ones only significantly changing in all three thermotolerant lines, but not Heinz

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              robofjoy Robert Reid added a comment - Make a heat map of these genes like Figure 13D in Anthony's paper, where each cultivar and temp is on the x-axis (8 sections with 2 time points each = 16 columns to show gene expression levels), and genes are on the y-axis. This heat map could be made for only the genes significantly changing for all temps/time points/cultivars, and another heat map could be made for the ones only significantly changing in all three thermotolerant lines, but not Heinz
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              robofjoy Robert Reid added a comment -

              Step 1: Explore if there are any cool ways in R to make better heatmaps.

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              robofjoy Robert Reid added a comment - Step 1: Explore if there are any cool ways in R to make better heatmaps.
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              robofjoy Robert Reid added a comment -

              Kelsey has basically done this.
              We have other tasks to tackle.

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              robofjoy Robert Reid added a comment - Kelsey has basically done this. We have other tasks to tackle.
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              robofjoy Robert Reid added a comment -

              Although, maybe we will want to do a complex heatmap.

              d3heatmap

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              robofjoy Robert Reid added a comment - Although, maybe we will want to do a complex heatmap. d3heatmap

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                • Assignee:
                  bbendick Brandon Bendickson
                  Reporter:
                  robofjoy Robert Reid
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                    Updated:
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