[IGBF-4161] Test Kelsie's R script - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
2
Epic Link:
Support NSF pollen grant
Sprint:
Spring 5

Description

GOAL:
We recieved Kelsey's R script that was used to generate some deseq comparisons .

We need to run it and make sure it works fine.
Thing is, it was shared as a MS Word doc !!!

https://docs.google.com/document/d/1UdyhcWkIuZ5zoUdh4h1q9HEAlfhtTg76anFAw3sZoB8/edit?usp=drive_link

So We need to copy the code into a new QMD file and ensure it works fine.

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Robert Reid created issue - 03/Apr/25 8:55 AM

Robert Reid made changes - 03/Apr/25 8:55 AM

Field	Original Value	New Value
Epic Link		IGBF-2993 [ 21429 ]

Robert Reid made changes - 03/Apr/25 9:48 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

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Robert Reid added a comment - 04/Apr/25 10:24 AM

To run the script as is, we also need ITAG Go terms which are in the Google drive. However they do not appear to get used and these lines likely can be removed.
Either way they are in the Google drive here:

https://drive.google.com/drive/folders/1Vp6US0ItacF0g9m9QR1FqOwXFQB9tf_S?usp=drive_link

The code for 8Hour 25C versus 37C works. (For Heinz)
As written the script repeats EVERYTHING for each variety and thus becomes a VERY long script.

Brandon's script will be a bit shorter as it calls functions once.

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Robert Reid added a comment - 04/Apr/25 10:24 AM To run the script as is, we also need ITAG Go terms which are in the Google drive. However they do not appear to get used and these lines likely can be removed. Either way they are in the Google drive here: https://drive.google.com/drive/folders/1Vp6US0ItacF0g9m9QR1FqOwXFQB9tf_S?usp=drive_link The code for 8Hour 25C versus 37C works. (For Heinz) As written the script repeats EVERYTHING for each variety and thus becomes a VERY long script. Brandon's script will be a bit shorter as it calls functions once.

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Robert Reid added a comment - 08/Apr/25 8:57 AM

Nothing more to do with this for now. Once we chat with Kelsie again, we will get some new areas to focus on.

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Robert Reid added a comment - 08/Apr/25 8:57 AM Nothing more to do with this for now. Once we chat with Kelsie again, we will get some new areas to focus on.