Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 6
Description
We need to look at the top 10 genes (p - adjusted) when done Cedar's way, Brandon's way at 8 hours.
And then look at 3 hours.
And then across the varieties.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Instead it is 5 genes.
And Kelsey has provided us with a gene list of interest:
https://docs.google.com/spreadsheets/d/1kV--PRog6wHw7--xbqElO4cJmB6wv95wjtmpgDFWFCE/edit?usp=sharing
The top 10 genes were indeed different than Cedar's list. But we have a clear understanding as to why. (deseq mixed model, more data incluided, Cedar subsets his data prior to analysis).